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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTCGGTCTTGAACCATTTGGCACTGATACTCTGTTCTTTGCATTTTATTATCAACAGgtacctgaactttctgtgattaatattattgtgtttttctgtcatgtgggcttatatccatttttttctgcag

Basic information

species Glycine max
transcript GLYMA19G28580.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G28580.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 14
AGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTCGGTCTTGAACCATTTGGCACTGATACTCTGTTCTTTGCATTTTATTATCAACAGgtacc-tgaactttctgtgattaatattattgtgtttttctgtcatgtgggcttatatccatttttttctgcag-----------------
|||||||||||| ||||| ||||||||||| || |||||  |  | ||||||||  | ||||||||||| || ||||||||||||||||| ||||| ||||||   | | |||||||| |  |   ||  |    ||| |  | ||||||  |||| |  |   | ||||  ||                 
AGTACAGGCACCCATTGTCAATAATCCTGCCTTCTGGGAACGGCTGGGTCTTGATACTTTTGGCACTGACACCCTGTTCTTTGCATTTTACTATCAGCAGgtattgttagctttctgtaacaatccttcatagtgtttaccattatgtgg--ttatcttgagcatattctcaagcgcattactttctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207828022|gb|GD798837.1|GD798837
EST:     TGATACTCTGTTCTTTGCATTTTATTATCAACAG                         AATACTTACCAACAATATTTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGG
genomic: TGATACTCTGTTCTTTGCATTTTATTATCAACAGgtacctgaac ... ttttctgcagAATACTTACCAACAATATTTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGG
EST: gi|8402502|gb|BE058136.1|BE058136
EST:     GTTCTTTGCATTTTATTATCAACAG                         AATACTTACCAACAATATTTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGG
genomic: GTTCTTTGCATTTTATTATCAACAGgtacctgaac ... ttttctgcagAATACTTACCAACAATATTTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGG
EST: gi|22929218|gb|BU546357.1|BU546357
EST:     TTGAACCATTTGGCACTGATACTCTGTTCTTTGCATTTTATTATCAACAG                         AATACTTACCAACAATATTTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGG
genomic: TTGAACCATTTGGCACTGATACTCTGTTCTTTGCATTTTATTATCAACAGgtacctgaac ... ttttctgcagAATACTTACCAACAATATTTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGG
EST: gi|27426935|gb|CA938455.1|CA938455
EST:     TTGAACCATTTGGCACTGATACTCTGTTCTTTGCATTTTATTATCAACAG                         AATACTTACCCACAA
genomic: TTGAACCATTTGGCACTGATACTCTGTTCTTTGCATTTTATTATCAACAGgtacctgaac ... ttttctgcagAATACTTACCAACAA
EST: gi|11687486|gb|BF595162.1|BF595162
EST:     TTGAACCATTTGGCACTGATACTCTGTTCTTTGCATTNTATTATCAACAG                         AATACTTACCAACAATATNTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGG
genomic: TTGAACCATTTGGCACTGATACTCTGTTCTTTGCATTTTATTATCAACAGgtacctgaac ... ttttctgcagAATACTTACCAACAATATTTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGG
EST: gi|7232311|gb|AW567668.1|AW567668
EST:     TTGAACCATTTGGCACTGATACTCTGTTCTTTGCATTTTATTATCAACAG                         AATACTTACCAAC
genomic: TTGAACCATTTGGCACTGATACTCTGTTCTTTGCATTTTATTATCAACAGgtacctgaac ... ttttctgcagAATACTTACCAAC