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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGGtgagttgctgcttagcacagttatttagatttataaacatcatttcctcaatattgttttcctttggatgttccctatatttttttttttatcaaatagggcacttaatgaactatgtatgtactaaatcctcttatttgacagc

Basic information

species Glycine max
transcript GLYMA18G48370.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G48370.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G16340.3 (Arabidopsis thaliana), 5'ss of exon 12
-TGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGGtgagttgctgcttagcacagttatttagatttataaacatcatttcctcaatattgttttcctttggatgttccctatatttttttttttatcaaatagggcacttaatgaactatgtatgtactaaatcctcttatttgacagc
 |||||||||||||  | |||||||| || ||||| |||||||| ||||||||||  | |||       || || |||   |||  ||| | |    ||  | ||  ||| |   |||  ||      ||||| ||    |  |                                                  
GTGCATGATGATCCTTTAAATGCACCGGTCGATGGTCCAACACAATGGgtgagtt-ttactt-------tttttcagacc-atatccattagtctaaca-caatgcattctt---gatcatc-----gtttttcttcccgttcag-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14009134|gb|BG725738.1|BG725738
EST:     TGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGC                         CTTTGCGCCACTTTAAGGAGCTACTTGAAGAGC
genomic: TGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGGtgagttgctg ... atttgacagcCTTTGCGCCACTTTAAGGAGCTACTTGAAGAGC
EST: gi|12771969|gb|BG236896.1|BG236896
EST:     TGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGC                         CTTTGCGCCACTTTAAGGAGCTACTTGAAGAGC
genomic: TGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGGtgagttgctg ... atttgacagcCTTTGCGCCACTTTAAGGAGCTACTTGAAGAGC
EST: gi|192294788|gb|FG987477.1|FG987477
EST:     TGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGC                         CTTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTA
genomic: TGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGGtgagttgctg ... atttgacagcCTTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCTG
EST: gi|193699456|gb|FK640289.1|FK640289
EST:     TGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGC                         CTTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCT
genomic: TGCATGATGATCCACTGAATGCACCTGTTGATGGCCCAACACAGTGGGtgagttgctg ... atttgacagcCTTTGCGCCACTTTAAGGAGCTACTTGAAGAGCTTGTAGCCATTGCT