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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTGATATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtactactattattcttttgttttccaacatactgatttatgttaaagcatgtacaaggctttttttcctttttttccctcatgcaaaggtttattgca

Basic information

species Glycine max
transcript GLYMA18G44820.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G44820.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G08380.1 (Arabidopsis thaliana), 5'ss of exon 11
GATCCTGATATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtactactattattcttttgttttccaacatactgatttatgttaaagcatgtacaaggctttttttcctttttttccctcatgcaaaggt-ttattgca-
 | || ||||||||||| |||||||||||||||||||||||| | || || || || || |||||  |||||||  | || ||||||   |||| ||  |   |      || | |   | |    | |||  |  || |       ||     |     |  | ||| | |  | | | |||| 
-ACCCGGATATGCTTGAAGTGGGAAATGGAGGGATGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGgtaa-gctat-atattcccga-----aatagagaaactctcttcaaacaacatata-------ttaagtctgaaaccaatgatgtatatatatcactgcag

upper sequence: GLYMA18G44820.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv10s0071g01100.t01 (Vitis vinifera), 5'ss of exon 11
GATCCTGATATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtac--tactattattcttttgttttccaacatactgatttatgttaaagcatgtacaaggctttttttcctttttttccctcat-gcaaaggtttattgca
 ||||||| ||||||||||| |||||||| || ||||| ||  ||||||| || || ||||||||  |||||||  ||||||||||    | ||   |||   || |||| ||      ||  || | |   ||  | |     ||||  |  ||   |       ||| |||             
-ATCCTGACATGCTTGAGGTAGGAAATGGGGGAATGACTAATGATGAATACATAGTCCACTTCAGCATATGGGCTATTTCCAAGgtggggtcctgaaatttccttcttttgcacatggatgccttctttcccagagtct-----gcttgctaaccaactgaggtaacattgcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208026787|gb|GD822987.1|GD822987
EST:     AGTTTATGGGCCCTTTCCAA                         GGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
genomic: AGTTTATGGGCCCTTTCCAAggtactacta ... gtttattgcaGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
EST: gi|51335838|gb|CO979704.1|CO979704
EST:     ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAA                         GGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
genomic: ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtactacta ... gtttattgcaGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
EST: gi|207751779|gb|GD723996.1|GD723996
EST:     ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAA                         GGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
genomic: ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtactacta ... gtttattgcaGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
EST: gi|192330118|gb|FK019773.1|FK019773
EST:     ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAA                         GGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
genomic: ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtactacta ... gtttattgcaGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
EST: gi|208198385|gb|GD995476.1|GD995476
EST:     ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAA                         GGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
genomic: ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtactacta ... gtttattgcaGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
EST: gi|31309897|gb|CD395100.1|CD395100
EST:     ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAA                         GGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
genomic: ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtactacta ... gtttattgcaGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
EST: gi|13312579|gb|BG406230.1|BG406230
EST:     ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAA                         GGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
genomic: ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtactacta ... gtttattgcaGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
EST: gi|193558294|gb|FK514903.1|FK514903
EST:     ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAA                         GGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
genomic: ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtactacta ... gtttattgcaGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
EST: gi|208124534|gb|GD921516.1|GD921516
EST:     ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGG-CCCTTTCCAA                         GGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATA
genomic: ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtactacta ... gtttattgcaGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATA
EST: gi|24206259|gb|BU965512.1|BU965512
EST:     ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAA                         GGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
genomic: ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtactacta ... gtttattgcaGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
EST: gi|208186280|gb|GD984585.1|GD984585
EST:     ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAA                         GGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT
genomic: ATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAggtactacta ... gtttattgcaGGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCAT