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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGAGCAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatgtctgtacattccaaatgggatgttatctgtattgaagttaaagtttctacctccgagtgttgtctgtattgcttttgattctttggctaca...

Basic information

species Glycine max
transcript GLYMA18G43020.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 11
GTGGGGAGCAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatgtctgtacattccaaatgggatgttatctgtattgaagttaaagtttctacctccgagtgttgtctgtattgcttttgattctttggctaca------
 |||||||| ||||| |||||||||||||| |||||||| || || ||||| || ||||| || ||||  |  | |  ||   |  || ||     || | ||| || | |   ||||| | ||    |   | || |    || |  | |  |   |     | |      
ATGGGGAGCCACTCTTATGAACTCTTTTCTCTTTAATGTCGGTCTCATTCTCCTCTGTTCTATCAGgtaggcttcttagt---tctcatatttcccgtcagctg-atagcatcaaaagtatgtattaacttttattcttacaatcgactattgtggctcactgaaattccag

upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 11
GTGGGGAGCAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatgtctgtacattccaaatgggatgttatctgtattgaagttaaagtttctacctccgagtgttgtctgtattgcttttgattctttggctaca----
 |||||||| ||||| ||||||||||| || || ||||| ||||| |||||||||||||| || |||| ||| | ||||  |  | |   ||   |  |||||||  ||   | || ||     |     |  |   |||  ||      || || | ||  ||||    
ATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGCCTCATTCTTCTTTGTTCAATCAGgtaagtctctctggtctcttcttctgcctttgtatctgt--tgggatcaa-gtgcactctgataaacgg-atctagatcaagcatgtttatgtgcatacattaa

upper sequence: GLYMA18G43020.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 11
GTGGGGAGCAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatgtctgtacattccaaatgggatgttatctgtattgaagttaaagtttctacctccgagtgttgtctgtattgcttttgattctttggctaca-----------------------------------------------------------
|||||| || ||||| |||||||| ||||| ||||||||||| |||||||| || |||||||| ||||  | |||| |      || ||||    |   |  | || |   |||         ||| |   | |       || || | ||  |   | |  || |                                                           
GTGGGGTGCCACTCTTATGAACTCCTTTCTTTTTAATGTGGGACTTATTCTCCTGTGTTCCATCAGgtttgcatgttta-gtcctctaaattcattaacagatataattgggttgggaccagcaccacaaggggggactcttactgttattt-tatgtagaatatatttccagaccttggtagatgtttatctataatcattgttgttggctcctccaatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522977|gb|BU081788.1|BU081788
EST:     ATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAG                         TGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC
genomic: ATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatgt ... accttttcagTGTGATCCAGTTCTGCTCCACAGCATTTGCCTACTATGCTCAAGCAACTGC