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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATACTATTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGTACATCATTTTTGTCCAAATTTGAGTGTTCTCAAATGCCTCATCCTgtaagcttttctataccaaattaaaccaaaattaagatatatctcttctgtggcatttggaacttacctatttttttattatcaattatccaaag

Basic information

species Glycine max
transcript GLYMA18G10150.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10150.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 5'ss of exon 11
CAATACTATTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGTACATCATTTTTGTCCAAATTTGAGTGTTCTCAAATGCCTCATCCTgta-agcttttctataccaaattaaaccaaaattaagatatatctcttctgtggcatttggaacttacctatttttt--tattatcaattatccaaag
|| || ||||| || |||||||||||||||| |||||| | || ||||||| ||| ||||| | || || ||||| |||||||| ||||||||||| ||| | |||| | || | | || | || | || || ||| ||| | ||| | ||| || || || | | | | |||
AAACACAATTGCCGTGCAAGCAGACATGCCATATAGTGGCTTGTCATCTTTTGGGACAGCATTTCTATCAAAGTTTGAATGTTCTCAGATGCCTCATCCAgtatattccttctcttgcactgattattctacttcatatttttca-ttatgttgcactcagaaagaagctaattgttagcatcttttacattgccaag

upper sequence: GLYMA18G10150.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 5'ss of exon 11
CAATACTATTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGTACATCATTTTTGTCCAAATTTGAGTGTTCTCAAATGCCTCATCCTgtaagcttttctataccaaatta--aaccaaaattaagatatatctctt--ctgtggcatttggaacttacctatttttttattatcaattatccaaag
|| || | || || |||||||| |||||||| |||||||||||||||||||| || | |||||||| || ||||| || ||||| |||||||| |||||| | || | | || | || | | || || || |||| || | || | || | ||| || | ||
GAACACAGTAGCAGTTCAAGCAGATATGCCATTCAGTGGTCTTACAACTTTTGGGACTGCCTTTTTGTCAAAGTTTGAATGCTCTCAGATGCCTCACCCTgtatgtttaacaacctcatgcttctgacaggagatcgttcattacttttgcctgtattgatttgctgataattgttgatccattcatctttgtttaag-

upper sequence: GLYMA18G10150.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 11
CAATACTATTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGTACATCATTTTTGTCCAAATTTGAGTGTTCTCAAATGCCTCATCCTgtaagcttttctataccaaattaaaccaaaattaagatatatctcttctgtggcatttggaacttacctatttttttattatcaattatccaaag
|| || |||||||| |||||||||||||| | |||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||| ||| |||| || | || || | | ||||| | || |||||| ||| || |||||| |||| ||| |||||
AAACACAATTGCTGTTCAAGCAGACATGCCTTACAGTGGTCTGACAACTTTTGGAACGGCATTTTTGTCCAAATTCGAGTGTTCTCAAATGCCGCATTCTgtgagttattactctataattatcatggaaatttctagattatcattctgtagcacctgaaacttaat--cttttatatgatcaaag--------