Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATACTATTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGTACATCATTTTTGTCCAAATTTGAGTGTTCTCAAATGCCTCATCCTgtaagcttttctataccaaattaaaccaaaattaagatatatctcttctgtggcatttggaacttacctatttttttattatcaattatccaaag

Basic information

species Glycine max
transcript GLYMA18G10150.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10150.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 5'ss of exon 11
CAATACTATTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGTACATCATTTTTGTCCAAATTTGAGTGTTCTCAAATGCCTCATCCTgta-agcttttctataccaaattaaaccaaaattaagatatatctcttctgtggcatttggaacttacctatttttt--tattatcaattatccaaag
 || || ||||| || |||||||||||||||| ||||||  |  || ||||||| ||| ||||| | || || ||||| |||||||| ||||||||||| ||| |    |||| |  ||      |    | || | || | ||  || ||| ||| |  |||   | ||| || ||   ||  |  |   | | |||
AAACACAATTGCCGTGCAAGCAGACATGCCATATAGTGGCTTGTCATCTTTTGGGACAGCATTTCTATCAAAGTTTGAATGTTCTCAGATGCCTCATCCAgtatattccttctcttgcactgattattctacttcatatttttca-ttatgttgcactcagaaagaagctaattgttagcatcttttacattgccaag

upper sequence: GLYMA18G10150.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 5'ss of exon 11
CAATACTATTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGTACATCATTTTTGTCCAAATTTGAGTGTTCTCAAATGCCTCATCCTgtaagcttttctataccaaatta--aaccaaaattaagatatatctctt--ctgtggcatttggaacttacctatttttttattatcaattatccaaag
 || ||  | || || |||||||| |||||||| |||||||||||||||||||| ||  | |||||||| || ||||| || ||||| |||||||| |||||| | ||  | |   ||   |    ||   |  |     ||  || ||  ||||     || |    ||  | ||  |  |||     || |  ||  
GAACACAGTAGCAGTTCAAGCAGATATGCCATTCAGTGGTCTTACAACTTTTGGGACTGCCTTTTTGTCAAAGTTTGAATGCTCTCAGATGCCTCACCCTgtatgtttaacaacctcatgcttctgacaggagatcgttcattacttttgcctgtattgatttgctgataattgttgatccattcatctttgtttaag-

upper sequence: GLYMA18G10150.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 11
CAATACTATTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGTACATCATTTTTGTCCAAATTTGAGTGTTCTCAAATGCCTCATCCTgtaagcttttctataccaaattaaaccaaaattaagatatatctcttctgtggcatttggaacttacctatttttttattatcaattatccaaag
 || || |||||||| |||||||||||||| |  |||||||| ||||||||||| ||  |||||||||||||||| ||||||||||||||||| ||| |||| || | ||       || |   |   |||||   | ||     |||||| |||  || ||||||     |||| ||| |||||          
AAACACAATTGCTGTTCAAGCAGACATGCCTTACAGTGGTCTGACAACTTTTGGAACGGCATTTTTGTCCAAATTCGAGTGTTCTCAAATGCCGCATTCTgtgagttattactctataattatcatggaaatttctagattatcattctgtagcacctgaaacttaat--cttttatatgatcaaag--------