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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGTATACACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGgtattagtctaattcaaagctggagttggttgggcatttcatggaatattttcatccttgcctcgaagaattgactaaaatgtcttcttaatcaatcaca...

Basic information

species Glycine max
transcript GLYMA18G08180.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G034143_T03 (Zea mays), 5'ss of exon 12
-TTCTGTATACACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGgtattagtctaattcaaagctggagttggttgggcatttcatggaatattttc---atccttgcctcgaagaattgactaaaatgtcttcttaatcaatcaca
  ||||| ||||||||||| || || |  |||||||||||||||||||| || ||||| |||||  |   |     |||       ||  |||     ||  |    |  |  |    |   || ||  | | | | || |||              |   |  
GATCTGTTTACACTGGTGTGGAGTTCTCCAAAAGGTTGTGTGGTGTCTCAGTGATCAGGAGgtaccaacttttcctaaacaatatattctttgtatgcttgtttaggttctaaccgagttaatgactt-aggcactcacaaaaggaggaaaaaggctatgta--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21602644|gb|BQ612975.1|BQ612975
EST:     ACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAG                         TGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATCAAGAT
genomic: ACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGgtattagtct ... ctaatttcagTGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATCAAGAT
EST: gi|14125241|gb|BG789679.1|BG789679
EST:     ACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAG                         TGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATCAAGAT
genomic: ACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGgtattagtct ... ctaatttcagTGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATCAAGAT
EST: gi|58019197|gb|CX705939.1|CX705939
EST:     ACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAG                         TGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATCAAGAT
genomic: ACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGgtattagtct ... ctaatttcagTGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATCAAGAT
EST: gi|58018989|gb|CX705731.1|CX705731
EST:     ACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAG                         TGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATCAAGAT
genomic: ACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGgtattagtct ... ctaatttcagTGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATCAAGAT