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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACCTGATGGCGCTCTATTAGATATCTTACGAAATGCTCATGATCTTCTTTCACAATGTGATATAAGACTTCCTGAGgtatatatgtattctaatgtgttttatgcatattgatttgttttcatgtggttgggttgggttcattttcatattatactagtttgcttattctaggtactttcaattattttatgttacgctttctctctcctgcag

Basic information

species Glycine max
transcript GLYMA18G02900.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02900.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv13s0067g01470.t01 (Vitis vinifera), 5'ss of exon 11
ACACCTGATGGCGCTCTATTAGATATCTTACGAAATGCTCATGATCTTCTTTCACAATGTGATATAAGACTTCCTGAGgtatat----atgtat-tctaatgtgttttatgcatattgatttgttttcatgtggttgggttgggttcattttcatattatact----agtttgcttattctaggtactttcaattattttatgtt-acgctttctctctcctgcag---------------------------------------------------
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ACTCCAGATGGTTCACTATTAGATATCATGCGGAATGCTTATGATCTTCTTTCTCAATGTGATATAAAAATGCCTGAGgtatttcatcataaatctcccccaggattgatat-caaaatttctcccttttggaagtggatatgactgctgattatatcttgctttcaactttgtttgtgtaatatttatttacttagtttatgtttgcaaagcctcatttttgttggcttttctgttgaagcaatgttctggtgttctgttgcatcataatctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523462|gb|BU082273.1|BU082273
EST:     TACGAAATGCTCATGATCTTCTTTCACAATGTGATATAAGACTTCCTGAG                         ATTGAAGCTAACGAGAACTATGTTGATTCGGGACCACCATTTCTCATCCTT
genomic: TACGAAATGCTCATGATCTTCTTTCACAATGTGATATAAGACTTCCTGAGgtatatatgt ... tctcctgcagATTGAAGCTAACGAGAACTATGTTGATTCGGGACCACCATTTCTCATCCTT
EST: gi|22522809|gb|BU081620.1|BU081620
EST:     TACGAAATGCTCATGATCTTCTTTCACAATGTGATATAAGACTTCCTGAG                         ATTGAAGCTAACGAGAACTATGTTGATTCGGGACCACCATTTCTCATCCTT
genomic: TACGAAATGCTCATGATCTTCTTTCACAATGTGATATAAGACTTCCTGAGgtatatatgt ... tctcctgcagATTGAAGCTAACGAGAACTATGTTGATTCGGGACCACCATTTCTCATCCTT
EST: gi|22540450|gb|BU090293.1|BU090293
EST:     TACGAAATGCTCATGATCTTCTTTCACAATGTGATATAAGACTTCCTGAG                         ATTGAAGCTAACGAGAACTATGTTGAT
genomic: TACGAAATGCTCATGATCTTCTTTCACAATGTGATATAAGACTTCCTGAGgtatatatgt ... tctcctgcagATTGAAGCTAACGAGAACTATGTTGAT