1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCTAAAGACAATCAAGAAGAAACTTATTAGGAAAGCCCTTGATATGATCCGTAGGATTGCTGATGAGGATCCTGATGAGTCCACTGACAAAGAAAAGAAAggtatggtgtaataattatgagtttcatctgttggaatccctatttttttatgggctaaggtttaccagaactcgtgtatcagtctagaatacttgtcttgttgtgtttgctttgtcataccttttcataatgtaagaggcgtttcttaaattctgttcattgactttgtacttccatcaatattaaatattgatgcaca
species | Glycine max |
transcript | GLYMA17G37820.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTAGGATTGCTGATGAGGATCCTGATGAGTCCACTGACAAAGAAAAGAAA GAAGATACGTCATCTGACAATAATGAGAAGAAAGGTCAATATTCCAAGTTCEST: gi|10848102|gb|BF071680.1|BF071680
genomic: GTAGGATTGCTGATGAGGATCCTGATGAGTCCACTGACAAAGAAAAGAAAggtatggtgt ... ttgatgcacaGAAGATACGTCATCTGACAATAATGAGAAGAAAGGTCAATATTCCAAGTTC
EST: GTAGGATTGCTGATGAGGATCCTGATGAGTCCACTGACAAAGAAAAGAAA GAAGATACGTCATCTGACAATAATGAGAAGAAAGGTCAATATTCCAAGTTCEST: gi|193590608|gb|FK544499.1|FK544499
genomic: GTAGGATTGCTGATGAGGATCCTGATGAGTCCACTGACAAAGAAAAGAAAggtatggtgt ... ttgatgcacaGAAGATACGTCATCTGACAATAATGAGAAGAAAGGTCAATATTCCAAGTTC
EST: GATGAGGAT-CTGGATGAGTCCACTGACAAAGAAAAGAAA GAAGATACGTCATCTGACAATAATGAGAAGAAAGGTCAATATTCCAAGTTC
genomic: GATGAGGATCCT-GATGAGTCCACTGACAAAGAAAAGAAAggtatggtgt ... ttgatgcacaGAAGATACGTCATCTGACAATAATGAGAAGAAAGGTCAATATTCCAAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTAAAGACAATCAAGAAGAAACTTATTAGGAAAGCCCTTGATATGATCCGTAGGATTGCTGATGAGGATCCTGATGAGTCCACTGACAAAGAAAAGAAAggtatggtgtaataattatgagtttcatctgttggaatccctatttttttatgggctaaggtttaccagaactcgtgtatcagtctagaatacttgtcttgttgtgtttgctttgtcataccttttcataatgtaagaggcgtttcttaaattctgttcattgactttgtacttccatcaatattaaatattgatgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA