1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTTCTCTGAGTATGATGATTATGTTCCCATGGTTGATAAGGCTGTTGACCTCGGGTGGAAGGAGAAACAAGTAGCAACTCAAAACTCATATGGCTCAACAggttagttagagacttgatgcatattccctgaagtaattgattctgatgtgcccccattgttaacttgctttcatattatttaagtctactgggatggag...
species | Glycine max |
transcript | GLYMA17G37150.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TCGGGTGGAAGGAGAAACAAGTAGCAACTCAAAACTCATATGGCTCAACA GAAAATTTCCTACTGAGTACTGGAAAGTCTGGTGGAAACTGTGCATATATCEST: gi|58023387|gb|CX710128.1|CX710128
genomic: TCGGGTGGAAGGAGAAACAAGTAGCAACTCAAAACTCATATGGCTCAACAggttagttag ... attcattgcaGAAAATTTCCTACTGAGTACTGGAAAGTCTGGTGGAAACTGTGCATATATC
EST: TCGGGTGGAAGGAGAAACAAGTAGCAACTCAAAACTCATATGGCTCAACA GAAAATTTCCTACTGAGTACTGGAAAGTCTGGTGGAAACTGTGCATATATCEST: gi|57575331|gb|CX548306.1|CX548306
genomic: TCGGGTGGAAGGAGAAACAAGTAGCAACTCAAAACTCATATGGCTCAACAggttagttag ... attcattgcaGAAAATTTCCTACTGAGTACTGGAAAGTCTGGTGGAAACTGTGCATATATC
EST: TCGGGTGGAAGGAGAAACAAGTAGCAACTCAAAACTCATATGGCTCAACA GAAAATTTCCTACTGAGTACTGGAAAGTCTGGTGGAAACTGTGCATATATCEST: gi|19270862|gb|BM887118.1|BM887118
genomic: TCGGGTGGAAGGAGAAACAAGTAGCAACTCAAAACTCATATGGCTCAACAggttagttag ... attcattgcaGAAAATTTCCTACTGAGTACTGGAAAGTCTGGTGGAAACTGTGCATATATC
EST: GGAAGGAGAAACAAGTAGCAACTCAAAACTCATATGGCTCAACA GAAAATTTCCTACTGAGTACTGGAAAGTCTGGTGGAAACTGTGCATATATC
genomic: GGAAGGAGAAACAAGTAGCAACTCAAAACTCATATGGCTCAACAggttagttag ... attcattgcaGAAAATTTCCTACTGAGTACTGGAAAGTCTGGTGGAAACTGTGCATATATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTCTGAGTATGATGATTATGTTCCCATGGTTGATAAGGCTGTTGACCTCGGGTGGAAGGAGAAACAAGTAGCAACTCAAAACTCATATGGCTCAACAggttagttagagacttgatgcatattccctgaagtaattgattctgatgtgcccccattgttaacttgctttcatattatttaagtctactgggatggag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggatgg