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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGGAATTGGACTGCTAATTTTGCAACAGCTTTCTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCTggtaagctatgctgatttcttgttaataatctaaagtaatatacctggagcaatattagggaaccatgaaatatttcggccagagttgatatctcatgtt...

Basic information

species Glycine max
transcript GLYMA17G36950.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401778|gb|EV271591.1|EV271591
EST:     CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCT                         GGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA
genomic: CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCTggtaagctat ... acattaaacaGGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA
EST: gi|21677651|gb|BQ630002.1|BQ630002
EST:     TGGAATTAATGGTGTTCNNNNNNNATTCCAGTACCATCTTTCGAAATGCT                         GGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA
genomic: TGGAATTAATGGTGTTCTTTTTT-ATTCCAGTACCATCTTTCGAAATGCTggtaagctat ... acattaaacaGGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA
EST: gi|4396935|gb|AI495932.1|AI495932
EST:     CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCT                         GGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA
genomic: CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCTggtaagctat ... acattaaacaGGAATCAGTTCAAGTGACGCGGCAACATTTGGAGTTGGTGCTGTTCA
EST: gi|19268732|gb|BM884988.1|BM884988
EST:     CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCT                         GGAATCAGTTCAAGTGACGCGGCAACATTTTGGAGTTG
genomic: CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCTggtaagctat ... acattaaacaGGAATCAGTTCAAGTGACGCGGCAACATTT-GGAGTTG
EST: gi|4283382|gb|AI440649.1|AI440649
EST:     CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCT                         GGAATCAGTTCAAGTGACGCGGCAAC
genomic: CTGGAATTAATGGTGTTCTTTTTTATTCCAGTACCATCTTTCGAAATGCTggtaagctat ... acattaaacaGGAATCAGTTCAAGTGACGCGGCAAC