Sequence
atgc intronic sequence ATGC exonic sequenceATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACTTCATGATAAGTGATAAAAGTTACTTTTCTCAGgtattttctgtaaatttgttttagaaacttttgaagtcttctgcattttgaacaaatttattggtatcactttgtcttcttgctctgaacag
Basic information
species | Glycine max |
transcript | GLYMA17G36540.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G36540.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os03g42750.1 (Oryza sativa), 5'ss of exon 11
ATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACTTCATGATAAGTGATAAAAGTTACTTTTCTCAGgtattttctgtaa---atttgttttagaaacttttgaagtcttctgcattttgaacaaatttattggtatcactttgtcttcttgctctgaacag
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ACTGAAGACAACTTTTGTTCGACGCGCATCAGAATTTTTGAGGAACTACTTCTCTAGCTTGGTGGACTTCATGATAAGTGACAAAAGCTACTTTTCTCAGgtttcttcacagacccattcttcgcagcaatttattaccttctatttttgttttctgagatgactcagagagttct--cttttaactgaaagtag
upper sequence: GLYMA17G36540.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G099056_T01 (Zea mays), 5'ss of exon 11
ATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACTTCATGATAAGTGATAAAAGTTACTTTTCTCAGgtattttctgtaaatttgttttagaaacttttgaagtcttctgcattttgaacaaatttattggtatcactttgtcttcttgctctgaacag
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ACTGAAAACAACTTTTGTTCGACGAGCATCAGAGTTTTTGCGGAACTACTTCTCCAGTTTGGTAGACTTCATGATCAGTGACAAAAGCTACTTTTCACAGgtttcttc-atagcttcatttttgaaagtaaatatttcctttcccatttgagatgaccgacagagttcacttt------taactgaaagcag
upper sequence: GLYMA17G36540.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 11
ATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACTTCATGATAAGTGATAAAAGTTACTTTTCTCAGgtattttc-tgtaaatttgttttagaaacttttgaagtcttct--gcattttgaac-aaatttattggtatcactttgtcttcttgctctgaacag
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ACTAAAAACTACATTTGTTAGGAGAGCATCTGAATTCTTAAGAAACTACTTCGCCAGTTTGGTGGATTTTATGATAAGTGATAAGAGTTACTTCTCTCAGgtattcccctatcttcatgttgttttattcttgataattatcttgacatttggggctaggaattctaatttttgctggatcacttgtattaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193436600|gb|FK403424.1|FK403424EST: TGCTAGTTTGGTGGACTTCATGATAAAGTGATAAAAGTTACTTTTCTCAG CGGGGACAGTTAAAGAGGCCTGATCATGCTGACCTGCGGTACAAGTGCAGG
genomic: TGCTAGTTTGGTGGACTTCATGAT-AAGTGATAAAAGTTACTTTTCTCAGgtattttctg ... ctctgaacagCGGGGACAGTTAAAGAGGCCTGATCATGCTGACCTGCGGTACAAGTGCAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACTTCATGATAAGTGATAAAAGTTACTTTTCTCAGgtattttctgtaaatttgttttagaaacttttgaagtcttctgcattttgaacaaatttattggtatcactttgtcttcttgctctgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA