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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCTGTGTGAATGGAGGGACATTGTTGCCCGTGCAGAGGATGAAAGTACAGGATATGTATTGCCAAATAAATCTGTTCTTGAAATCGgtatgaaacttgtgcaaattctgtgtatcttaatattagcaatttggatgtatgctcataatttaatttgtatttacttgtttaaaag

Basic information

species Glycine max
transcript GLYMA17G24130.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G24130.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0056g01320.t01 (Vitis vinifera), 5'ss of exon 9
GGGCTGTGTGAATGGAGGGACATTGTTGCCCGTGCAGAGGATGAAAGTACAGGATATGTATTGCCAAATAAATCTGTTCTTGAAATCGgtatgaaacttgtgcaaattctgtgtatcttaatattagcaatttggatgtatgctcataatttaatttgtatttacttgtt----taaaag-
|| || | ||||||| | ||  | ||||| ||||| |||||||||||||| || ||| ||||||| || ||| || ||||||||||||||||    ||||||| | ||       | || || |||    ||| | |  || || |   ||||   |   || |||| ||    |||||  
GGCCTTTTTGAATGGCGAGATGTGGTTGCTCGTGCTGAGGATGAAAGTACTGGTTATATATTGCCCAACAAAACTCTTCTTGAAATCGgtattg--cttgtgccagttaatcaatttttcattttacttcttttgtt-catactgaacttttatgctactttcactttttaaattaaaaag