1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TATATCTATAGCCAAAGCAGGAATAACAACTGTTCTTAATTCAAGGACTTCAGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAAGgtctactatcataactctcttttatcttttttctgtatgtaacaaagcataatagtcattacaagagactgatagctgccttgaatgtttttccag
species | Glycine max |
transcript | GLYMA17G11220.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAAG ACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGATEST: gi|207793961|gb|GD766175.1|GD766175
genomic: CAGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAAGgtctactatc ... gtttttccagACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGAT
EST: CAGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAAG ACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGATEST: gi|207785275|gb|GD759026.1|GD759026
genomic: CAGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAAGgtctactatc ... gtttttccagACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGAT
EST: CAGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAAG ACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGATEST: gi|7924143|gb|AW830169.1|AW830169
genomic: CAGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAAGgtctactatc ... gtttttccagACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGAT
EST: CAGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAAG ACTGCACAGGATAACATTNGACTTGCAGACAACTATTCTTTCTAGGTTTGAEST: gi|193390513|gb|FK356433.1|FK356433
genomic: CAGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAAGgtctactatc ... gtttttccagACTGCACAGGATAACATT-GACTTGCAGACAACTATTCTTTCTAGGTTTGA
EST: AGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAAAG ACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGAEST: gi|193489060|gb|FK456757.1|FK456757
genomic: AGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAA-Ggtctactatc ... gtttttccagACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGA
EST: CAGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAAG ACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGAT
genomic: CAGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAAGgtctactatc ... gtttttccagACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATATCTATAGCCAAAGCAGGAATAACAACTGTTCTTAATTCAAGGACTTCAGTTCTTGCTGCTGCCAACCCTCCATCAGGCCGATACGATGATCTTAAGgtctactatcataactctcttttatcttttttctgtatgtaacaaagcataatagtcattacaagagactgatagctgccttgaatgtttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC