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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATTACGTAGCATGGGTCTGTGATCAGGATGCATACGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtttgttacattggttattatgagtactttgttcatgactaaatgtccccaagaactacattggtttttttattttgtattatgcactttatgagtttatgtattgtgtcattactaacttcatggtttgaattttcccttgttcag

Basic information

species Glycine max
transcript GLYMA17G10610.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G10610.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv17s0000g05800.t01 (Vitis vinifera), 5'ss of exon 11
GAAGATTACGTAGCATGGGTCTGTGATCAGGATGCATACGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtttgttacattggttattatgagtactttgttcatgactaaatgtccccaagaactacattggtttttttattttgtattatgcactttatgagtttatgtattgtgtcattactaacttcatggtttgaattttcccttgttcag
|  || || || ||||||||||||||||| |||||||| ||||||||||| || || ||||| || || ||| |  |||| |||||||||||| | | | ||   | | |  | |   | | |  ||   |  |||      | |  |   ||||| |    |   ||| | ||  || |  |  ||| | | |                                           
GTGGACTATGTTGCATGGGTCTGTGATCAAGATGCATATGCATGCAGTGGACAAAAGTGCTCTGCGCAGTCAATAGTATTCATGCATGAGgttagctgc-ttcactctgacaactctgtaggttttg--catttgtttatttggaagattatggttgtaggctgaagtaat-tgttctcttggcatttctctct-------------------------------------------

upper sequence: GLYMA17G10610.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S41_177V6.1 (Physcomitrella patens), 5'ss of exon 12
GAAGATTACGTAGCATGGGTCTGTGATCAGGATGCATACGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtttgttacattggttattatgagtactttgttcatga-------ctaaatgtccccaag---aactacattggtttttttattttgtattatgcactttatgagtttatgtattgtgtcatt--actaacttcatggtttg-aattttcccttgttcag-------------------------
|| || || || || ||||| ||||| ||||| || ||||| |||||||| || |||||||||||||||||| |  |||||||||||||||||   || |    |  ||  ||| |  || |  | |         ||||||| |        | ||      || || ||  | |  || ||  |  |         | | ||| ||| | |  || |||||  |  |||  |||    || | |                             
GAGGACTATGTTGCGTGGGTGTGTGACCAGGACGCTTACGCTTGCAGTGGACAAAAATGCTCAGCACAATCAATACTATTTATGCATGAGgttccatatacatttcttttagagcatgttttcgaggcaattcttttaaatgtacatggatctagctctgagagtattattgctgtacatcattgaagtcgacttaaaaagcattttgttagttgaccaacttggtcttttacaataagtccatatctgtgatgtccatattttcttcgttgcag

upper sequence: GLYMA17G10610.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ29772 (Selaginella moellendorffii), 5'ss of exon 10
GAAGATTACGTAGCATGGGTCTGTGATCAGGATGCATACGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtttgttacattggttattatgagtactttgttcatgactaaatgtccccaagaactacattggtttttttattttgtattatgcactttatgagtttatgtattgtgtcattactaacttcatggtttgaattttcccttgttcag
   || ||||| |||||||| || || ||||||||||| || |||||||||||||| || || ||||| ||  |  | || ||||| |||||     | | || ||  |   ||     |        || ||   ||  |    |                                                                                           
ATTGACTACGTTGCATGGGTTTGCGACCAGGATGCATATGCGTGCAGTGGTCAGAAGTGTTCGGCACAGTCCATTCTTTTCATGCACGAGgt---cgatactgttttcttaaag----ctagcaggagctgaaaagccgtagttgcag-----------------------------------------------------------------------------------------

upper sequence: GLYMA17G10610.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ08918 (Selaginella moellendorffii), 5'ss of exon 10
GAAGATTACGTAGCATGGGTCTGTGATCAGGATGCATACGCATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtttgttacattggttattatgagtactttgttcatgactaaatgtccccaagaactacattggtttttttattttgtattatgcactttatgagtttatgtattgtgtcattactaacttcatggtttgaattttcccttgttcag
   || ||||| |||||||| || || ||||||||||| || |||||||||||||| || || ||||| ||  |  | || ||||| |||||     | | || ||  |   |||   | |     |  |||| | |      |  | ||                                                                                       
ATTGACTACGTTGCATGGGTTTGCGACCAGGATGCATATGCGTGCAGTGGTCAGAAGTGTTCGGCACAGTCCATTCTTTTCATGCACGAGgt---cgatactgttttcttaaagt---tagcaggagcttaaaagccgt----agttgcag--------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298195802|gb|HO044193.1|HO044193
EST:     CATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAG                         AACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA
genomic: CATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtttgttaca ... ccttgttcagAACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA
EST: gi|207832574|gb|GD802690.1|GD802690
EST:     CATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAG                         AACTGGTCTAAAACTTACCTTGCTATCTA
genomic: CATGCAGTGGTCAGAAATGCTCAGCACAATCATTGTTATTTATGCATGAGgtttgttaca ... ccttgttcagAACTGGTCTAAAACTT-CCTTGCTATCTA
EST: gi|193564409|gb|FK518796.1|FK518796
EST:     CACAATCATTGTTATTTATGCATGAG                         AACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA
genomic: CACAATCATTGTTATTTATGCATGAGgtttgttaca ... ccttgttcagAACTGGTCTAAAACTTCCTTGCTATCTAAGTTGAAAGATCTTGCTGAGAGA