1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCATGAATCTTGCCTATGCTGCTGGCCGTGCTGGAGGCACAATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAAgtaagtttttagtttttttttttttctaaattacaaataagaaagctgtagattgtgtcatgtcattctaagttctaacatttttgaagtgtccttatccaatggctttatagatcatagggtacatcatacatgtgtcttattgtcaacgtaaattctcctctaattggctattttgctgcttccag
species | Glycine max |
transcript | GLYMA17G09740.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAA GATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAAGAAGCEST: gi|6201132|gb|AW153232.1|AW153232
genomic: GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAAgtaagttttt ... ctgcttccagGATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGA-GAAGC
EST: GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAA GATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCAEST: gi|16279091|gb|BI943253.1|BI943253
genomic: GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAAgtaagttttt ... ctgcttccagGATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCA
EST: GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAA GATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCAEST: gi|14990207|gb|BI315880.1|BI315880
genomic: GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAAgtaagttttt ... ctgcttccagGATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCA
EST: GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAA GATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCAEST: gi|254319063|gb|GR828791.1|GR828791
genomic: GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAAgtaagttttt ... ctgcttccagGATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCA
EST: GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAA GATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCAEST: gi|16281789|gb|BI944670.1|BI944670
genomic: GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAAgtaagttttt ... ctgcttccagGATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCA
EST: GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAA GATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCAEST: gi|16278414|gb|BI942892.1|BI942892
genomic: GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAAgtaagttttt ... ctgcttccagGATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCA
EST: GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAA GAT-ATCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCA
genomic: GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAAgtaagttttt ... ctgcttccagGATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATGAATCTTGCCTATGCTGCTGGCCGTGCTGGAGGCACAATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAAgtaagtttttagtttttttttttttctaaattacaaataagaaagctgtagattgtgtcatgtcattctaagttctaacatttttgaagtgtccttatccaatggctttatagatcatagggtacatcatacatgtgtcttattgtcaacgtaaattctcctctaattggctattttgctgcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG