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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATATATTTTGGAGATCACCTATTTAGTGACTTAAGAGGCCCCTCAAAGGCAGGCTGGCGTACAGCAGCAATCATCCATGAACTAGAGGCACgtctgtaatctaatccagtttcatgtagattttgagcttgtttgtcattatttctcattacttttatagacagataagagtagacattcctctgtctatg...

Basic information

species Glycine max
transcript GLYMA17G07760.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07760.2 (Glycine max), 5'ss of exon 11
lower sequence: EFJ37011 (Selaginella moellendorffii), 5'ss of exon 9
GTGATATATTTTGGAGATCACCTATTTAGTGACTTAAGAGGCCCCTCAAAGGCAGGCTGGCGTACAGCAGCAATCATCCATGAACTAGAGGCACgtct-gtaatctaatccagtttcatgtagattttgagcttgtttgtcattatttctcattacttttatagacagataagagtagacattcctctgtctatg
||  | ||||||||||||||| |||||||||| ||| ||||||| |||||||| || ||||| || || || || || |  || || ||||   |||| |  || |||  |||| | | | |  |  ||  |   |||                                                         
GTCCTGTATTTTGGAGATCACTTATTTAGTGATTTACGAGGCCCTTCAAAGGCTGGATGGCGCACGGCTGCTATAATTCGGGAGCTTGAGgtctgtcttgagatataaatcagtataaagcaactcatgttccactttcag------------------------------------------------------

upper sequence: GLYMA17G07760.2 (Glycine max), 5'ss of exon 11
lower sequence: EFJ33659 (Selaginella moellendorffii), 5'ss of exon 9
GTGATATATTTTGGAGATCACCTATTTAGTGACTTAAGAGGCCCCTCAAAGGCAGGCTGGCGTACAGCAGCAATCATCCATGAACTAGAGGCACgtct-gtaatctaatccagtttcatgtagattttgagcttgtttgtcattatttctcattacttttatagacagataagagtagacattcctctgtctatg
||  | ||||||||||||||| |||||||||| ||| ||||||| |||||||| || ||||| || || || || || |  || || ||||   |||| |  || |||  |||| | | | |         ||  |||  || | |                                                 
GTCCTGTATTTTGGAGATCACTTATTTAGTGATTTACGAGGCCCTTCAAAGGCTGGATGGCGCACGGCTGCTATAATTCGGGAGCTTGAGgtctgtcttgagatataaatcagtataaagcaa--------ctcattttccactttcag----------------------------------------------