Sequence
atgc intronic sequence ATGC exonic sequenceTGATGTTGCCGATGGGCTCTTGGAAGTATTTGGTTTAAAACAAGGATGGCATGCATCATTTGTTATGGTTGAACTGATCTCTGCTAAGCACTTAGTTCAGgtaccacagtttattgtttatgttcttgagtgaattgcttacttttcaaattaaaaaattttgaactttagattccctgattgcttttgctgagaggttg...
Basic information
species | Glycine max |
transcript | GLYMA17G07480.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G07480.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os08g15090.1 (Oryza sativa), 5'ss of exon 13
TGATGTTGCCGATGGGCTCTTGGAAGTATTTGGTTTAAAACAAGGATGGCATGCATCATTTGTTATGGTTGAACTGATCTCTGCTAAGCACTTAGTTCAGgtaccacagtttattgtttatgttcttgagtgaattgcttacttttcaaattaaaaaattttgaactttagattccctgattgcttttgc--tgagaggttg-
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TCAATCAGACGATGGTCTTCTTGAAATATTTGGATTGAAGCAAGGGTGGCATGCATCCCTTGTGATGGTTGAACTAATATCTGCAAAGCACATAGCTCAGgtacttttgctccctgcacaagatctgaatagcagaaggtatttt---aatgcattactgttcaatttggagctcaaaggttaaaaatgtagtagtaaatttt
upper sequence: GLYMA17G07480.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G57690.1 (Arabidopsis thaliana), 5'ss of exon 9
TGATGTTGCCGATGGGCTCTTGGAAGTATTTGGTTTAAAACAAGGATGGCATGCATCATTTGTTATGGTTGAACTGATCTCTGCTAAGCACTTAGTTCAGgtaccacagttta-----------ttgtttatgttcttgagtgaattgctt--acttttcaaattaaaaaattttgaactttagattccctgattgcttttgctgagaggttg
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ACAAGCCGATGATGGACTACTTGAGATCTTTGGGTTAAAGCAAGGATGGCATGCTTCCTTTGTTATGGTTGAGCTTATATCTGCCAAACACATTGCACAGgtacttcaattcaaacaaaccaaaccgtttttttttttgacaaaatagggtcgatctaccaaactagta--ttatatcatcaataattaacaagtattttag-----------
upper sequence: GLYMA17G07480.1 (Glycine max), 5'ss of exon 11
lower sequence: AT2G18730.1 (Arabidopsis thaliana), 5'ss of exon 11
TGATGTTGCCGATGGGCTCTTGGAAGTATTTGGTTTAAAACAAGGATGGCATGCATCATTTGTTATGGTTGAACTGATCTCTGCTAAGCACTTAGTTCAGgtaccacagtttattgtttatgttcttgagtgaattgcttacttttcaaattaaaaaattttgaactttagattccctgattgcttttgctgagaggttg
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ACATTGTGATGATGGTTTGATAGAGATTTTCGGTTTTAAGCAAGGATGGCACGCGTCATTTGTCATGGCTGAGCTCATCTCTGCCAAGCACATAGCTCAGgta---------acttcaaaagacactggtcaa--tgtataatctttttagccatgtgtttgactgtttcattttggtgatcatttcag-----------
upper sequence: GLYMA17G07480.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv11s0052g01840.t01 (Vitis vinifera), 5'ss of exon 11
TGATGTTGCCGATGGGCTCTTGGAAGTATTTGGTTTAAAACAAGGATGGCATGCATCATTTGTTATGGTTGAACTGATCTCTGCTAAGCACTTAGTTCAGgtaccacagttt-------attgtttat-gttcttgagtga--attgcttacttttcaaatta---aaaaattttgaactttagattccctgattgcttttgctgagaggttg
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TCATGTCGATGATGGGCTTCTAGAAATTTTTGGCCTAAAGCAGGGATGGCATGCTTCATTTGTAATGGTGGAACTCATCTCTGCCAAGCACATTGCACAGgtattgcagttattttgaaattttttattattcatgtatgacaagtgtttggtcttagcttcacttaaaaggttcaagtttcagcattgtgcatttttat-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254319478|gb|GR830729.1|GR830729EST: ATGCATCATTTGTTATGGTTGAACTGATCTCTGCTAAGCACTTAGTTCAG GCATCAGCTATTCGATTGGAAGTCAGAGGTGGACAGTGGAAAAATGCATAT
genomic: ATGCATCATTTGTTATGGTTGAACTGATCTCTGCTAAGCACTTAGTTCAGgtaccacagt ... tatctttcagGCATCAGCTATTCGATTGGAAGTCAGAGGTGGACAGTGGAAAAATGCATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGTTGCCGATGGGCTCTTGGAAGTATTTGGTTTAAAACAAGGATGGCATGCATCATTTGTTATGGTTGAACTGATCTCTGCTAAGCACTTAGTTCAGgtaccacagtttattgtttatgttcttgagtgaattgcttacttttcaaattaaaaaattttgaactttagattccctgattgcttttgctgagaggttg
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