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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCAATATTGCATATGGAAAAGGAGATGCAACCGAGGCAGAAATTATAGCTGCGGCAGAATTGGCAAACGCTCATAGGTTCATTAGTAGTTTGCAGAAGgtaaattgcagtattctattaactcaatctctactccatctatagtattctcaaattctgaattagtacatgttatttagacattatatgaatataggtctgaaaagttgaaaacaatatgcag

Basic information

species Glycine max
transcript GLYMA17G04590.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04590.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv05s0020g00900.t01 (Vitis vinifera), 5'ss of exon 11
AGCCAATATTGCATATGGAAAAGGAG---ATGCAACCGAGGCAGAAATTATAGCTGCGGCAGAATTGGCAAACGCTCATAGGTTCATTAGTAGTTTGCAGAAGgtaaattgcagtattctattaactcaatctctactccatctatagtattctcaaattctgaattagtacatgttatttagacattatatgaatataggtctgaaaagttgaaaacaatatgcag
   |||||||| ||||||||||| ||   ||||||| ||||||||||| |||||||| |||||||| || || || ||    |||||||||||||| ||| |||||  ||    |  |||  ||   ||| | ||| |  |    ||| | ||  || ||    || |  |   ||  |  |  ||                                         
---CAATATTGGATATGGAAAAGAAGGAAATGCAACAGAGGCAGAAATCATAGCTGCAGCAGAATTAGCCAATGCCCACCACTTCATTAGTAGTTTACAGCAGgta--ttatttt-ctctgcta--ccaaacacta-taaagaagtagcagtcaaaattttctgatcatcagcagtactaaatgcag----------------------------------------