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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACAATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTCTCTATCGCACTTGCTTACAATCAGgtgaaagaatcaaacttcattgcttttaattcttcatctcttgccactttcaagttttaaatactgttttctagaacattttcacactattcaacaatca...

Basic information

species Glycine max
transcript GLYMA17G02560.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 12
-------------------------------------GTAACAATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTCTCTATCGCACTTGCTTACAATCAGgtgaaagaat-caaacttcattgcttttaattcttcatctcttgccactttcaagttttaaatactgttttctag--aacattttcacactattcaacaatca
                                     ||||| ||||||||||||||||| ||||||||||| || || || || |||||||| || |||||           |||| ||        |  |    |      |  |  ||   |||||||  | |       |   ||  | ||| | || ||  |  ||  
GTCTTCACCGGATGAGAAAATAGACTTAAAGAAACAAGTAACCATTTGGTGGGCTGGTCTGATGCGTGGTGCAGTGTCAATGGCTCTTGCTTATAACCAGgttttgatccgtgaactacaagaaacaaagataaaaaa-----gtgatctttgggttttaataagttcccatgacttaatctcttctctctgttacatcatag

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 13
GTAACAATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTCTCTATCGCACTTGCTTACAATCAGgtgaaagaatcaaacttcattgcttttaat--tcttcatctcttgccactttcaag-ttttaaatactgttttctagaacattttcacactattcaacaatca
|| |||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||| | | | |  |  ||      ||||||   | | || |  | |    ||| ||  | | |  ||  ||  | |  |     |  | |  | | | | |   
GTCACAATTTGGTGGGCTGGTCTTATGCGTGGTGCTGTTTCTATGGCACTAGCTTATAATCAGgtaagacattggatgttgtccttttttaagggtttacagcattggatggtttaaaaatctcatgtagggtgatatgaatgtcatggaaaacactaaccta---