Sequence
atgc intronic sequence ATGC exonic sequenceGTACATCGCGTGCTTGTGGATCTTGTTTCTGCTTCTGCAAATGCAACGCCTGGTCTTGGAAGGTATCCTCCATTCAAGAGAGAGgtaacattgatgtgctgtaacttacatgtaacttggtttgtttttagaaattaccttgctcatttgttgcaatttttag
Basic information
species | Glycine max |
transcript | GLYMA17G00480.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os02g50550.1 (Oryza sativa), 5'ss of exon 11
GTACATCGCGTGCTTGTGGATCTTGTTTCTGCTTCTGCAAATGCAACGCCTGGTCTTGGAAGGTATCCTCCATTCAAGAGAGAGgta--acattgatgtgctgta---acttaca-tgtaacttggtttgtttttagaaattacctt-gctcatt-tgttgcaatttttag-------
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GTACACCGTGTATTATTGGACATAGTAAATGCTTCTGCAAATGCTACACCAGGACTTGGAAGATATCCTCCATTCAAACGCGAGgtaccactttgttctatttcaccaacttacaatgcattctacttccctttcacctgcttcctgagcacaacatcccatcatctcttttctgaag
upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os06g13820.1 (Oryza sativa), 5'ss of exon 11
GTACATCGCGTGCTTGTGGATCTTGTTTCTGCTTCTGCAAATGCAACGCCTGGTCTTGGAAGGTATCCTCCATTCAAGAGAGAGgtaaca--ttgatgtgctgtaacttacatgtaacttggttt---gtttttagaaattacc--ttgctcatttgt-tgcaatttttag---------------
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GTACATCGTGTATTGTTAGACATTGTCAATGCTTCAGCAAATGCCACACCAGGACTTGGAAGATATCCTCCATTCAAGCGCGAGgtatcacctagctattttagagtttctttcctttcgagtttcacgttggtagagtttattgttgactgatgtgagtaaaaaatctatgtttcctttcgcaag
upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 5'ss of exon 11
GTACATCGCGTGCTTGTGGATCTTGTTTCTGCTTCTGCAAATGCAACGCCTGGTCTTGGAAGGTATCCTCCATTCAAGAGAGAGgtaacattgatgtgctgtaacttacatgtaacttggtttgtttttagaaattaccttgctcatttgttgcaatttttag----
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GTTCACCGAGTGCTTGTTGACATAGTTTCAGCTTCCGCGAATGCCACACCTGGTCTTGGGAGATATCCTCCTTTTAAGAGAGAGgtaattatgcttttactgctctttca-gttgcatttttcgtcttactaatagctgtttcttttcttaaataatcgtcaaccag
upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 11
GTACATCGCGTGCTTGTGGATCTTGTTTCTGCTTCTGCAAATGCAACGCCTGGTCTTGGAAGGTATCCTCCATTCAAGAGAGAGgtaacattgatgtgctgtaacttacat--gtaacttggtttgtttttagaaattaccttgctcatttgttgcaatttttag----
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GTTCACCGAGTTCTTGTTGACATAGTTTCAGCTTCTGCAAATGCTACACCTGGACTTGGGAGATATCCTCCTTTCAAGCGAGAGgtaataatgattttttggtgctttattcagtaatattttatcatttcggtaacagttattcctttctgac-taatcatcaaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208190948|gb|GD988292.1|GD988292EST: CTGCAAATGCAACGCCTGGTCTTGGAAGGTATCCTCCATTCAAGAGAGAG ATTGTGGCAATTGCAAGTTCAGCCCTAGAGGCATTTAAAAATGAATCCAAA
genomic: CTGCAAATGCAACGCCTGGTCTTGGAAGGTATCCTCCATTCAAGAGAGAGgtaacattga ... caatttttagATTGTGGCAATTGCAAGTTCAGCCCTAGAGGCATTTAAAAATGAATCCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACATCGCGTGCTTGTGGATCTTGTTTCTGCTTCTGCAAATGCAACGCCTGGTCTTGGAAGGTATCCTCCATTCAAGAGAGAGgtaacattgatgtgctgtaacttacatgtaacttggtttgtttttagaaattaccttgctcatttgttgcaatttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA