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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatgttcaacctctgcattcactttaggcctgaagagcatatccaagattgacaaaactttgaaaattaattgttggctgaattgaactgttttgtgtag

Basic information

species Glycine max
transcript GLYMA16G28310.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G28310.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os05g36270.1 (Oryza sativa), 5'ss of exon 9
CATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatgttcaacctctgcattcactttaggcctgaagagcatatccaagattgacaaaactttgaaaattaattgttggctgaattgaactgttttgtgtag
 ||||| |||||||| || ||||| ||||| ||||||||||| |||||||||||||| ||  | || || ||||| ||||||||||||||||   || |  | ||||| | |      | |   ||  || | ||  | |||||   ||  |    | ||      | ||| |                    
TATGGTTGCTGATGTCCACCGTACTTTGCTATATGGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCAAACGGAAAACTTCGgtatgc--tgatgcaactctgaactg---caaaggtagagtagtaaatgta-gattgctgaagttcgctacatgtggcat-ggcag--------------------

upper sequence: GLYMA16G28310.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os01g64660.4 (Oryza sativa), 5'ss of exon 8
CATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtat--gtcatgttcaacctctgcat-tcactttaggcctga-agagcatatccaagattgacaaa-actttgaaaattaattgttggctgaattgaactgttttgtgtag
 ||||| |||||||| || ||||||||||| ||||||||  | |||||||||||||| ||||| || || |||||||||||||| |||||    | | |   |  ||| |||| ||||||      ||  |   |  ||   | ||||| ||| | ||   || | |     |    |||||  |             
TATGGTTGCTGATGTCCACCGTACGTTGCTATATGGAGGAGTATTTTTGTACCCTGCAGACAAGAAGAGCCCAAATGGAAAACTCCGgtacacattaagcctactctcggcatctcacttcgcttatggtacttccaatttcatattgataaacaattctgaattcaccaaatcttggaattacag------------

upper sequence: GLYMA16G28310.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0072g00770.t01 (Vitis vinifera), 5'ss of exon 10
CATGGTAGCTGATGTTCATCGTACGTTGCTTTATGGAGGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatg----ttcaacctctgcattcactttaggcctga-agagcatatccaagattgacaaa--actttgaaaattaattgttg--gctgaatt-gaactgttttgtgtag-----
||||||||||||||| || || || || ||||| || || |||||||||||||||||||| || || || || || |||||||| ||||| ||  ||    |||| | ||  |  || |  |   | |   | | || ||     | ||   |   ||    | |||||||| |||   ||||||| |   |   |||| | |     
CATGGTAGCTGATGTCCACCGCACATTACTTTACGGTGGTATCTTTTTGTACCCTGCTGATAAGAAGAGCCCCAACGGAAAACTGCGgtaagtactgatgtttcaccttcctctctctccctcaacttctcaaaacaaatttgcaaatgcagatttacaacaacaattaatttttgtgactgaatttggtttaacttgtatggaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31474714|gb|CD416742.1|CD416742
EST:     GGCATCTTTTTGTACCCTGCTGACNNNNNNNGTCCAAATGGAAAACTTCG                         TGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
genomic: GGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatg ... ttttgtgtagTGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
EST: gi|26269057|gb|CA820120.1|CA820120
EST:     GGCATCTTTTTGTACCCTGCTGACNNNNNNNGTCCAAATGGAAAACTTCG                         TGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
genomic: GGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatg ... ttttgtgtagTGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
EST: gi|15204366|gb|BI427134.1|BI427134
EST:     GGCATCTTTTTGTACCCTGCTGACNNNNNNNGTCCAAATGGAAAACTTCG                         TGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
genomic: GGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatg ... ttttgtgtagTGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
EST: gi|31457542|gb|CD399570.1|CD399570
EST:     GGCATCTTTTTGTACCCTGCTGACNNNNNNNGTCCAAATGGAAAACTTCG                         TGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
genomic: GGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatg ... ttttgtgtagTGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
EST: gi|31473114|gb|CD415142.1|CD415142
EST:     GGCATCTTTTTGTACCCTGCTGACCAAAAAAGTCCAAATGGAAAACTTCG                         TGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
genomic: GGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatg ... ttttgtgtagTGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
EST: gi|22928833|gb|BU545972.1|BU545972
EST:     GGCATCTTTTTGTACCCTGCTGACNNNNNNNGTCCAAATGGAAAACTTCG                         TGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
genomic: GGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatg ... ttttgtgtagTGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
EST: gi|31469604|gb|CD411632.1|CD411632
EST:     GGCATCTTTTTGTACCCTGCTGACNNNNNNNGTCCAAATGGAAAACTTCG                         TGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
genomic: GGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatg ... ttttgtgtagTGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
EST: gi|192304055|gb|FG993885.1|FG993885
EST:     TTTTTGTACCCTGCTGAC-AAAAAAGTCCAAATGGAAAACTTCG                         TGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
genomic: TTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatg ... ttttgtgtagTGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
EST: gi|151398810|gb|EV268681.1|EV268681
EST:     GGCATCTTTTTGTACCCTGCTGACNNNNNNNGTCCAAATGGAAAACTTCG                         TGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
genomic: GGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatg ... ttttgtgtagTGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
EST: gi|31456318|gb|CD398346.1|CD398346
EST:     GGCATCTTTTTGTACCCTGCTGACCAAAAAAGTCCAAATGGAAAACTTCG                         TGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
genomic: GGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatg ... ttttgtgtagTGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
EST: gi|7692550|gb|AW760653.1|AW760653
EST:     GGCATCTTTTTGTACCCTGCTGACNNNNNNNGTCCAAATGGAAAACTTCG                         TGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
genomic: GGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatg ... ttttgtgtagTGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
EST: gi|192304054|gb|FG993884.1|FG993884
EST:     GGCATCTTTTTGTACCCTGCTGACAAAAAA-GTCCAAATGGAAAACTTCG                         TGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGA
genomic: GGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatg ... ttttgtgtagTGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGA
EST: gi|21675556|gb|BQ627907.1|BQ627907
EST:     GGCATCTTTTTGTACCCTGCTGACNNNNNNNGTCCAAATGGAAAACTTCG                         TGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG
genomic: GGCATCTTTTTGTACCCTGCTGACAAAAAAAGTCCAAATGGAAAACTTCGgtatgtcatg ... ttttgtgtagTGTCCTGTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAGGCAGGAGG