Sequence
atgc intronic sequence ATGC exonic sequenceCCATGACAAACGTTCAAAATTGCCTAGTTGGATACTATCTCACTTACATGATGCCCACCTGAACTTGAGCACAGACATGGCTTTGCATATAGCACGTGAGgtatgcccttttgctttattttgcattttctttttatcctctttttctgttgtttatttcccttcagataaattatgcttctattttatcttaagcagta...
Basic information
species | Glycine max |
transcript | GLYMA16G28290.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G28290.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os05g05260.1 (Oryza sativa), 5'ss of exon 10
CCATGACAAACGTTCAAAATTGCCTAGTTGGATACTATCTCACTTACATGATGCCCACCTGAACTTGAGCACAGACATGGCTTTGCATATAGCACGTGAGgtatgcccttttgctttattttgcattttctttttatcctctttttctgttgtttatttcccttcagataaattatgcttctattttatcttaagcagta--------
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CCATGATAAACGGTCTAAACTGCCTGGGTGGATACTGTCACACTTACATGATGCGCACCTAAATCTGAGCACTGATATGGCTTTGCATATAGCTCGTGAGgtatgttccataacatt------tatttttctttga--ctggtgctatgtagtttgaattgcttcaagtactgtaacttgtaatcatttaaagagcaagtttatctct
upper sequence: GLYMA16G28290.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G097605_T02 (Zea mays), 5'ss of exon 5
CCATGACAAACGTTCAAAATTGCCTAGTTGGATACTATCTCACTTACATGATGCCCACCTGAACTTGAGCACAGACATGGCTTTGCATATAGCACGTGAGgtatgccct-----tttgctttattttgc-attttctttttatcctctttttctgttgtttatttc--ccttcagataaattatgcttctattttatcttaagcagta
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GCATGATAAACGGTCCAAGTTGCCTGGGTGGATACTCTCGCATTTGCATGATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATAGCTCGTGAGgtatgctttacagatttgttttacttgactgcttcctttaaagcttctgttgctttcggctatgcggatttgcaaagcaatttgctgccaattttattat--------
upper sequence: GLYMA16G28290.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 5'ss of exon 11
CCATGACAAACGTTCAAAATTGCCTAGTTGGATACTATCTCACTTACATGATGCCCACCTGAACTTGAGCACAGACATGGCTTTGCATATAGCACGTGAGgtatgcccttt-tgctttattttgcattttctttttatcctctttttctgttgtttatttccct-tcagat---aaattatgcttctattttatcttaagcagta
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TCATGATAAACGCTCTAAATTGCCTGGGTGGATTCTGTCACATTTACGTGATGCACACCTGAATTTGAGCACTGACATGGCTTTGCATATTGCACGAGAGgtatgtctcttattgcgtgtccacaatcttgatattattgaccttggaaaacatgagataatctgtcagacttgaaagtatggttcaataggagcatgtc-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208096357|gb|GD892106.1|GD892106EST: ATGCCCACCTGAACTTGAGCACAGACATGGCTTTGCATNTAGCACGTGAG TTCCTCAGGAAAATGGCCCAG
genomic: ATGCCCACCTGAACTTGAGCACAGACATGGCTTTGCATATAGCACGTGAGgtatgccctt ... ttgaatgcagTTCCTCAGGAAAATGGCCCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCATGACAAACGTTCAAAATTGCCTAGTTGGATACTATCTCACTTACATGATGCCCACCTGAACTTGAGCACAGACATGGCTTTGCATATAGCACGTGAGgtatgcccttttgctttattttgcattttctttttatcctctttttctgttgtttatttcccttcagataaattatgcttctattttatcttaagcagta
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