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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCGGCAATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGCATAACTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATgtaagtacactgcctggatatttctgccttttttctgaaagttctctccatttttttaaatatatttggcttgagttttttttttcttttttcttttttctttttccag

Basic information

species Glycine max
transcript GLYMA16G27970.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27970.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G43190.3 (Arabidopsis thaliana), 5'ss of exon 13
TGCTGCGGCAATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGCATAACTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATgtaagtacactgcctggatatttct-gccttttttctgaaagttctctccatttttttaaatatatttggcttgagttttttttttcttttttcttttttctttttccag
  |  | || ||||||||||||||||| ||||| |||||||| || ||||| || |||||||| ||||||||||| |||||  | || || ||| | |||||||||        |||  |||||  |  ||  || ||| |     ||   ||||| | |  ||||||  |   | ||      ||| ||| | |               
CACATCAGCGATTGCAGCTGCCTTTGGAGGAGGCTTGCCTCCGGGTATAACCGGCACAAATGATAGGTGTACAGTCCTTGTCTCTAACCTGAATGCAGATgtaagt--------tggtcatttcccgttttgcttttgataa----cttagtttttcttacaatatttt-ccaaacttaccagattcatttgtttcag------------

upper sequence: GLYMA16G27970.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0072g00310.t01 (Vitis vinifera), 5'ss of exon 12
TGCTGCGGCAATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGCATAACTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATgtaag-----tacact-gcctggatatttctgccttttttctgaaagttctctccatttttttaaatatat---ttggcttgagttttttttttcttttttcttttttctttttccag---------------------
|||  | || ||||| ||||||||||| ||||||||||| ||||| || | ||| |||||||| |||||||| || |||||  | ||||| |||||||| ||| |     |  |||  ||    |  |||| | | || |        | | |  ||||||   | | |||   |||  || |  |||| | ||   | ||||      | | |   |                     
TGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCTGGAATTAGTGGGACAAATGACAGGTGTACTGTCCTTGTCTCTAATCTAAATCCTGACgtatgacttctctactcacccttcttcttcttcttcttcttcttcttctttatttatttttcctattttatcttttgtattaaaattttctgttggctcttctaccacttatgtttgggaactttttctgtcatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7284482|gb|AW597072.1|AW597072
EST:     CTGGAACAAATGAAAGGTGTACAGGTCTTGTTGCAAATCTCAATCCTGAT                         AGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
genomic: CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATgtaagtacac ... ctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
EST: gi|61241638|gb|DN591029.1|DN591029
EST:     CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGAT                         AGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
genomic: CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATgtaagtacac ... ctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
EST: gi|192326435|gb|FK017707.1|FK017707
EST:     CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGAT                         AGAATAGATGAGGATAAACTGTTCAACTTGTTCTTCATTTATGGGAACATT
genomic: CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATgtaagtacac ... ctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
EST: gi|193348643|gb|FK317733.1|FK317733
EST:     CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGAT                         AGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
genomic: CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATgtaagtacac ... ctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
EST: gi|17023569|gb|BM094603.1|BM094603
EST:     CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGAT                         AGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
genomic: CTGGAACAAATGAAAGGTGTACAGTTCTTGTTGCAAATCTCAATCCTGATgtaagtacac ... ctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
EST: gi|14989899|gb|BI315589.1|BI315589
EST:     TGCAAATCTCAATCCTGAT                         AGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT
genomic: TGCAAATCTCAATCCTGATgtaagtacac ... ctttttccagAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATT