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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGTTCAAACAAGAATTACGCGACGGATTCATCGAAGCTTGTCTACATCTTGTAAACCGTGATTTTGATGCATTGGCCAAGGACTTTGTCACTCTTGGgtatttatatctatttatggtcccttacagttattaaagtgattattctcattgaaataagatatcactgcttgtaaattttatcag

Basic information

species Glycine max
transcript GLYMA16G27500.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27500.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G305007_T01 (Zea mays), 5'ss of exon 11
GTGAGTTCAAACAAGAATTACGCGACGGATTCATCGAAGCTTGTCTACATCTTGTAAACCGTGATTTTGATGCATTGGCCAAGGACTTTGTCACTCTTGGgtatttatatctatttatggtcccttacagttattaaagtgattattctcattgaaataagatatcactgcttgtaaattttatcag--------------------------------------------------------------------
| || |||  ||||||| | || || ||||| || ||||||||||| |||||||| ||||||||||||||||| || || || |||||||| || ||||||||   | || ||| |   |||    ||   | | ||   | ||   | ||||    |     |  |    || |    | | | ||                                                                    
GAGAATTCCGACAAGAACTTCGTGATGGATTTATTGAAGCTTGTCTTCATCTTGTTAACCGTGATTTTGATGCTTTAGCAAAAGACTTTGTAACCCTTGGgtaagaaaat-tatctgaagtctgc-actaatgtgaatcagttttcacacattaggttggttcagtatca-ttatgtgatatgttaggtttctgaagtggaattcgtttttactaatgatccagcaaatgcaacttatctttacaaatcttgcag

upper sequence: GLYMA16G27500.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G71810.1 (Arabidopsis thaliana), 5'ss of exon 10
GTGAGTTCAAACAAGAATTACGCGACGGATTCATCGAAGCTTGTCTACATCTTGTAAACCGTGATTTTGATGCATTGGCCAAGGACTTTGTCACTCTTGGgtatttatatctatttatggtcccttacagttattaaagtgattattctcattgaaataagatatcactgcttgtaaattttatcag
| || || |  | ||||||||| || |||||||| ||||| ||||| ||||||||||| ||||| ||  | ||  |||| || |||||||| ||||| ||||| |  ||   | |   |||  ||  | |    | || |  | ||| |||          || | |   |    || || |||   
GGGACTTTAGGCCAGAATTACGTGATGGATTCATGGAAGCATGTCTTCATCTTGTAAATCGTGACTTCAAAGCGCTGGCTAAAGACTTTGTAACTCTGGGgtactc-tagtcact---ggtgtctatctgaatctgaacttttaattgtcaacatttcctaattttatc-cgcaaaacttctatag-

upper sequence: GLYMA16G27500.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0001g01620.t01 (Vitis vinifera), 5'ss of exon 11
GTGAGTTCAAACAAGAATTACGCGACGGATTCATCGAAGCTTGTCTACATCTTGTAAACCGTGATTTTGATGCATTGGCCAAGGACTTTGTCACTCTTGGgtatttatatctatttatggtcccttacagttattaaagtgattattctcattgaa----------ataagatatcactgcttgtaaattttatcag
|||| ||  ||| |||| | || || ||||| || ||||| ||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||  |||  ||| |    |||| |  | ||  | ||| ||| |||||||||||           |||||       |||   |||| | |  |||
GTGAATTTGAACCAGAACTCCGAGATGGATTTATTGAAGCCTGTCTCCATCTTGTAAACCGTGATTATGATGCATTGGCTAAGGACTTCGTCACTCTTGGgtata-ataattatct----tccccttaaattgctgaagagataattctcattgatgaggatatttataaggctggtttgccgataaactctg-cag