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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATAGTGAGTACTCGCATGCTTGGTCAGTATGGTTTCCTTGCTAAGgtgagagataaggcctatcagacatgttctcctagtggttgaatcgcttccagttttcatacttccacatgtatacag

Basic information

species Glycine max
transcript GLYMA16G26300.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26300.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv01s0244g00140.t01 (Vitis vinifera), 5'ss of exon 10
GCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATAGTGAGTACTCGCATGCTTGGTCAGTATGGTTTCCTTGCTAAGgtgagagataaggcctatcagacat-gttctcctagtggttgaatcgcttccagttttcatact-tccacatgtatacag-----------
|| ||  | || ||||| |||||||| || ||||| |||||| | |||||||| ||||| || ||||||||||| | ||| |||||||| |||||||||  |      ||       | | || |    | ||||   |   |  | | |   | || |||  |||  | |             
GCTGTACTGACCAGCATAGTTTTGAAGCGGAATGTCACCATGCTAGATATAGTTAGTACGCGGATGCTTGGTCAATTTGGCTTCCTTGCAAAGgtgagaattgctttgtagtttttgttgctccctctcttgttgccacatataaattctaactgctgtccgtatggttgctttatccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208245175|gb|GE041583.1|GE041583
EST:     TGGATATAGTGAGTACTCGCATGCTTGGTCAGTATGGTTTCCTTGCTAAG                         GTGTTTTCAATCTTTGAAGAGTTAGG
genomic: TGGATATAGTGAGTACTCGCATGCTTGGTCAGTATGGTTTCCTTGCTAAGgtgagagata ... atgtatacagGTGTTTTCAATCTTTGAAGAGTTAGG
EST: gi|208096619|gb|GD893334.1|GD893334
EST:     TGGATATAGTGAGTACTCGCATGCTTGGTCAGTATGGTT-CCT-GCTAAG                         GTGTTTTCAAT
genomic: TGGATATAGTGAGTACTCGCATGCTTGGTCAGTATGGTTTCCTTGCTAAGgtgagagata ... atgtatacagGTGTTTTCAAT
EST: gi|9986794|gb|BE660902.1|BE660902
EST:     TGGATATAGTGAGTACTCGCATGCTTGGTCAGTATGGTTTCCTTGCTAAG                         GTGTTTTCAATCTTTGAAGAGTTAGGCATATCAGTTGATGTTGTAGCTACA
genomic: TGGATATAGTGAGTACTCGCATGCTTGGTCAGTATGGTTTCCTTGCTAAGgtgagagata ... atgtatacagGTGTTTTCAATCTTTGAAGAGTTAGGCATATCAGTTGATGTTGTAGCTACA
EST: gi|58021976|gb|CX708717.1|CX708717
EST:     TGGATATAGTGAGTACTCGCATGCTTGGTCAGTATGGTTTCCTTGCTAAG                         GTGTTTTCAATCTTTGAAGAGTTAGGCATATCAGTTGATGTTGTAGCTACA
genomic: TGGATATAGTGAGTACTCGCATGCTTGGTCAGTATGGTTTCCTTGCTAAGgtgagagata ... atgtatacagGTGTTTTCAATCTTTGAAGAGTTAGGCATATCAGTTGATGTTGTAGCTACA