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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATTgtaagcacagactactcattctgttatttatttatttttcttctgcttctgtttgtttacatttcctttcttgatttaatggctcaaataactgagtaaatttcttag

Basic information

species Glycine max
transcript GLYMA16G26090.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26090.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv13s0019g04070.t01 (Vitis vinifera), 5'ss of exon 10
GGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATTgtaagcacagactactcattctgttatttatttatttttcttctgcttctgtttgtttacatttcctttcttgatttaatggctcaaataactgagtaaatttcttag-------------------
||||||||||||| | |||||||||||||||||| |||||||||||||||      |||||    || ||  ||  |       || || |   | || |||| |    | |||  || | |||   ||  | |||  |  ||  ||                     
GGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATTgtaagcacaat---ttcattacaatacttcatttctccagaattggttttcagttttcacatatatgattttgggttgagggcaataagga-tgacaagtttggttgaatcaatgtgaatgttgcag

upper sequence: GLYMA16G26090.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv13s0019g04060.t01 (Vitis vinifera), 5'ss of exon 10
GGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATTgtaagcacagactactcattctgttatttatttatttttcttctgcttctgtttgtttacatttcctttcttgatttaatggctcaaataactgagtaaatttcttag-------------------
||||||||||||| |  ||||||||||||||||| ||| |||||||||||   |  | |  |  |  ||| ||| |      |  | ||    || || |||| |  | | |||  || |  ||   ||  | |||  |  ||  ||                     
GGTGGTATTCTTACTTGTGGCTTCCATTCATCCCCTTAGTTgtaagcacaatttcatta--caatcctttgtttctccaggattggttttcagtt-ttaacatatgttcttttgggttgagagcaataagga-tgacaagtttggttgaatcaatgtgaatgttgtag