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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGTGACACTCATAGGTTACTCACTTGGGGCAAGAGTTATTTTCAAGTGTCTACAGTATTTGGCTAAAACTGAAAACGGTGgtaggtatttccagtttcctctttttttcctttgtttgtccttgatgtgtttagattatttgactccatattaaatcgtatccttttttgtttttctgtt...

Basic information

species Glycine max
transcript GLYMA16G24310.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24310.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 11
GCCTGTGACACTCATAGGTTACTCACTTGGGGCAAGAGTTATTTTCAAGTGTCTACAGTATTTGGCTAAAACTGAAAACGGTGgtaggtatttccagtttcctctttttttcctttgtttgtccttgatgtgtttagattatttgactccatattaaatcgtatccttttttgtttttctgtt
||||||||||||| |||||||||| ||||| ||| |||| |||||||||||||| |||||||||||| |||||||| |   |||||  |  | ||    ||    | |||    | | | ||   |  ||  || |   | |   || | |  ||     |                      
GCCTGTGACACTCGTAGGTTACTCTCTTGGAGCACGAGTGATTTTCAAGTGTCTGCAGTATTTGGCTGAAACTGAACAAAATGgtaactggtacc---ctcaagctgtttgtgatggatggtttgtattgcattaatgatgtgatacacaaatttttgcag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193310273|gb|FK274113.1|FK274113
EST:     AAGAGTTATTTTCAAGTGTCTACAGTATTTGGCTAAAACTGAAAACGGTG                         GTGAACTAGTAGAAAAAGTTGTGCTTCTTGGAGCACCCATCCCAATCAAGG
genomic: AAGAGTTATTTTCAAGTGTCTACAGTATTTGGCTAAAACTGAAAACGGTGgtaggtattt ... ttattgacagCTGAACTAGTAGAAAAAGTTGTGCTTCTTGGAGCACCCATCCCAATCAAGG
EST: gi|193308273|gb|FK274380.1|FK274380
EST:     AGTTATTTTCAAGTGTCTACAGTATTTGGCTAAAACTGAAAACGGTG                         GTGAACTAGTAGAAAAAGTTGTGCTTCTTGGAGCACCCATCCCAATCAAGG
genomic: AGTTATTTTCAAGTGTCTACAGTATTTGGCTAAAACTGAAAACGGTGgtaggtattt ... ttattgacagCTGAACTAGTAGAAAAAGTTGTGCTTCTTGGAGCACCCATCCCAATCAAGG
EST: gi|58016941|gb|CX703683.1|CX703683
EST:     AAGAGTTATTTTCAAGTGTCTACAGTATTTGGCTAAAACTGAAAACGGTG                         CTGAACTAGTAGAAAAAGTTGTGCTTCTTGGAGCACCCATCCCAATCAAGG
genomic: AAGAGTTATTTTCAAGTGTCTACAGTATTTGGCTAAAACTGAAAACGGTGgtaggtattt ... ttattgacagCTGAACTAGTAGAAAAAGTTGTGCTTCTTGGAGCACCCATCCCAATCAAGG
EST: gi|58016695|gb|CX703437.1|CX703437
EST:     AAGAGTTATTTTCAAGTGTCTACAGTATTTGGCTAAAACTGAAAACGGTG                         CTGAACTAGTAGAAAAAGTTGTGCTTCTTGGAGCACCCATCCCAATCAAGG
genomic: AAGAGTTATTTTCAAGTGTCTACAGTATTTGGCTAAAACTGAAAACGGTGgtaggtattt ... ttattgacagCTGAACTAGTAGAAAAAGTTGTGCTTCTTGGAGCACCCATCCCAATCAAGG