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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTGgtgagtattgtcttctcagtcttagctttgtacttactggttcaagatactttgatgctttgtttttatatttcactttgggatatgcaaaactaagaat...

Basic information

species Glycine max
transcript GLYMA16G19560.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os04g23890.2 (Oryza sativa), 5'ss of exon 9
ACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTGgtgagtattgtcttctcagtcttagctttgtacttactggttc--aagatactttgatgctttgtttttatatttcactttgggat-atgcaaaactaagaat
 |||||||||||||||||||| ||||| ||||||||||||||||| |||||| | |  |||||||| || ||||  ||||||  ||| ||||| || |||||  |    |  | ||  || |||  ||     | | || |    || |||  ||| ||  |  | |||  ||||     |  ||| |    || |||   | 
GCTTCAATACTTCATTGGTGTGCAACTTGATGGAAGTGATCATGTTGAACCCCTCAGGAACCGCCTTTCGGAGAATACTGAGATACAGAGTGCCAAATTGgtaggc-cagcttact--gtattaatttccatttcaatgatctcaaatataaattggtgtataatattttaatttaggaataagatgagatgaatctagagac

upper sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G032351_T01 (Zea mays), 5'ss of exon 8
ACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTGgtgagt-attgtcttctcagtcttagctttgtacttactggttcaagatactttgatgctttgttttta--tatttcactttgggatatgcaaaactaagaat
 ||||||||||||||||| |||||| | |||||||| || ||||| |||||| | |  || || || |||||||  ||||| | |||||||||||| |||||   | | | | ||||||||   |  |||    ||  ||||| ||  ||  |  ||  |  ||    |   |    |||||   || |  || |  | ||  
GCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGACCATGTTGAACCCCTTAGGAATCGTCTCTCTGAGAACACTGAACTACAAAGTGCTAAATTGgtagctcaatctattctcagt---aattttcattttgatggtttaaactagatctataataggtgcacaataagccaactttaaaatgtaaaacaaaatgagg

upper sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G58140.4 (Arabidopsis thaliana), 5'ss of exon 10
ACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTGgtgagtattgtcttctcagtcttagctttgtacttactggttcaagatactttgatgctttgtttttatatttcactttgggatatgcaaaactaagaat
 |||||||||||||| ||||| || || |||||||||||||||||||| ||| |  |||| ||  ||||||||| ||| |||   || ||| | || |||||  ||  | || | ||   || || ||| |    |    ||    ||     ||  || ||   ||       | ||| |                   
GCTTCAATACTTCATCGGTGTGCAGCTTGATGGAAGTGATCATGTAGAGCCCCTCCAAAATCGTTTGTCTGAGAGAACAGAGATGCAGAGTTCGAAATTGgtatgtggt-tcatatcctactgagttttttgaacatctctttcctatcaaaggagactatgacattggtcacaattttag-------------------

upper sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 9
ACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTAAGTTGgtgagtat-tgtcttctcagtcttagctttgtacttactggttcaagatactttgatgctttgtttttatatttcactttgggat-atgcaaaactaagaat--
||||||||||||||||||||| ||| ||||||||||||||||| | |||||| |   |||||||||||| |||  |||||||||||||||||||||| ||||   ||| | | ||| |  |||| |  ||||  |||   ||  ||| |    |||   | ||     | |||  |        | || || | |||  |||  
ACTTCAATACTTCATTGGTGTCCAATTAGATGGAAGTGATCATCTGGAACCCCTCCGAAACCGCCTGTCAGAGCAAACTGAGCAACAAAGTGCTAAGCTGgtatatatattttttcaccatctttgaattgt--ttatgagtggaagttggactgag--tgtgggggaagattctaaacaaaactgatacagatctagaaatga