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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCTTAGTAACAACTCTTTTGATGCATCGGATGCTCCAACTTGGTTCACAATTCTTCCATCACTCACCACTCTgtaagtctaattacatataagtgtttatccttttctacctgttacctaaacttatgaaataacatacaatctaacaaggattttttccctgcttaacttcaatgtgctgaag

Basic information

species Glycine max
transcript GLYMA16G18090.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G18090.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0056g00100.t01 (Vitis vinifera), 5'ss of exon 11
GGATCTTAGTAACAACTCTTTTGATGCATCGGATGCTCCAACTTGGTTCACAATTCTTCCATCACTCACCACTCTgtaagtctaattacatataagtgtttatccttttctacctgttacctaaacttatgaaataacatacaatctaacaaggattttttccctgcttaacttcaatgtgctgaag
 ||  | ||||||||| |||||||  |||| || |||||| |||||||| |||   | |||||||||||||| |||||||        |||   |      |    | |  |  | ||  |    ||| ||| ||    |  |||  ||    ||| |                             
CGACTTAAGTAACAACACTTTTGACCCATCAGAAGCTCCAGCTTGGTTCTCAACCTTACCATCACTCACCACCCTgtaagctctccatcattacaacagcaaaa--tatgaaaatttttacagcccttctgagat----tggaattcaattgtgatgtccag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193698607|gb|FK641176.1|FK641176
EST:     GCATCGGATGCTCCAACTTGGTTCACAATTCTTCCATCACTCACCACTCT                         TATTATGGAGTTTGGATCCTTTCAAGGTACTCTTCCATCAAAACTCTTTGA
genomic: GCATCGGATGCTCCAACTTGGTTCACAATTCTTCCATCACTCACCACTCTgtaagtctaa ... tgtgctgaagTATTATGGAGTTTGGATCCCTTCAAGGTACTCTTCCATCAAAACTCTTTGA