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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTTTCCCTCAAAATGTCGTGTCCCAAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattattctctttctcaagaaacattctatttttggaatggtgttcatttggaattttggtcctacttaaaactgataatatgtttatattcattg...

Basic information

species Glycine max
transcript GLYMA16G17190.3
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019735|gb|CX706477.1|CX706477
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCTTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|151410996|gb|EV280811.1|EV280811
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|9440072|gb|BE440583.1|BE440583
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|19053982|gb|BM732649.1|BM732649
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCATGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|22541803|gb|BU091646.1|BU091646
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|15814583|gb|BI786858.1|BI786858
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|8669044|gb|BE190146.1|BE190146
EST:     AATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|151403120|gb|EV272930.1|EV272930
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCGAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|14011349|gb|BG726271.1|BG726271
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|14011702|gb|BG726624.1|BG726624
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|58014637|gb|CX701379.1|CX701379
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGGTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|14009092|gb|BG725696.1|BG725696
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|17519199|gb|BM188241.1|BM188241
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTG
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTG
EST: gi|15814521|gb|BI786796.1|BI786796
EST:     GCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: GCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|58022806|gb|CX709547.1|CX709547
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCNTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|23729995|gb|BU763106.1|BU763106
EST:     AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: AAATCAGTACCCCAATCTTCTTTGTAAATGCAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
EST: gi|31467378|gb|CD409406.1|CD409406
EST:     CAGCCTATGACTCATGGCAG                         ATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT
genomic: CAGCCTATGACTCATGGCAGgtcagattat ... tttgattcagATCAAAAACATTTTGGCACCAGGTGCTGCTGATCCCCGTGGCCAATGGCGT