1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATAGCTGCAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtttctgatctcaatagctcatctataatcgaattttgttacacataaaagaatttcactatgcttctaatcaatcctagaaaacagtctaaa...
species | Glycine max |
transcript | GLYMA16G17150.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TAGCTAGATATAAGCAGCTGCTCACCTGATCAACTAAGTGAAAATGCA-G ACTGCAAGTCTGAATTCEST: gi|6455108|gb|AW185791.1|AW185791
genomic: AAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGT-AAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTC
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGGGGGAGGCGACTCTTCATEST: gi|5753570|gb|AI960857.1|AI960857
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|23725726|gb|BU760827.1|BU760827
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAACCTTGATATAAACAACTGCTCACCTGATCCACTAAGGAAAATGCAAG ACTTCTAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|6666238|gb|AW277697.1|AW277697
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: TAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|6666292|gb|AW277751.1|AW277751
genomic: TAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|6668069|gb|AW279520.1|AW279520
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|6454130|gb|AW184878.1|AW184878
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: TCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|7589651|gb|AW705421.1|AW705421
genomic: TCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|6667401|gb|AW278852.1|AW278852
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|6724652|gb|AW309107.1|AW309107
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|6341677|gb|AW164501.1|AW164501
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|6667540|gb|AW278991.1|AW278991
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|6455152|gb|AW185835.1|AW185835
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|151394400|gb|EV264271.1|EV264271
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|6455706|gb|AW186389.1|AW186389
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|6455546|gb|AW186229.1|AW186229
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|6455060|gb|AW185743.1|AW185743
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|6668150|gb|AW279601.1|AW279601
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|10255077|gb|BE822843.1|BE822843
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|7589195|gb|AW704974.1|AW704974
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATGTAAGCAACTGCTCACCTGATCAACTGAGTAATATGCAAG ACTTCAAGTCTGAATTCGAAAAAGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|298163578|gb|HO012311.1|HO012311
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAEST: gi|5753462|gb|AI960749.1|AI960749
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGA
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCATEST: gi|6454487|gb|AW185170.1|AW185170
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATAGCTGCAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtttctgatctcaatagctcatctataatcgaattttgttacacataaaagaatttcactatgcttctaatcaatcctagaaaacagtctaaa
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaat