Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATAGCTGCAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtttctgatctcaatagctcatctataatcgaattttgttacacataaaagaatttcactatgcttctaatcaatcctagaaaacagtctaaa...

Basic information

species Glycine max
transcript GLYMA16G17150.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6070525|gb|AW099912.1|AW099912
EST:     TAGCTAGATATAAGCAGCTGCTCACCTGATCAACTAAGTGAAAATGCA-G                         ACTGCAAGTCTGAATTC
genomic: AAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGT-AAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTC
EST: gi|6455108|gb|AW185791.1|AW185791
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGGGGGAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|5753570|gb|AI960857.1|AI960857
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|23725726|gb|BU760827.1|BU760827
EST:     CAACCTTGATATAAACAACTGCTCACCTGATCCACTAAGGAAAATGCAAG                         ACTTCTAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|6666238|gb|AW277697.1|AW277697
EST:     TAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: TAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|6666292|gb|AW277751.1|AW277751
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|6668069|gb|AW279520.1|AW279520
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|6454130|gb|AW184878.1|AW184878
EST:     TCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: TCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|7589651|gb|AW705421.1|AW705421
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|6667401|gb|AW278852.1|AW278852
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|6724652|gb|AW309107.1|AW309107
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|6341677|gb|AW164501.1|AW164501
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|6667540|gb|AW278991.1|AW278991
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|6455152|gb|AW185835.1|AW185835
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|151394400|gb|EV264271.1|EV264271
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|6455706|gb|AW186389.1|AW186389
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|6455546|gb|AW186229.1|AW186229
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|6455060|gb|AW185743.1|AW185743
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|6668150|gb|AW279601.1|AW279601
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|10255077|gb|BE822843.1|BE822843
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|7589195|gb|AW704974.1|AW704974
EST:     CAAGCTTGATGTAAGCAACTGCTCACCTGATCAACTGAGTAATATGCAAG                         ACTTCAAGTCTGAATTCGAAAAAGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|298163578|gb|HO012311.1|HO012311
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGA
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGA
EST: gi|5753462|gb|AI960749.1|AI960749
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
EST: gi|6454487|gb|AW185170.1|AW185170
EST:     CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAG                         ACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT
genomic: CAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtt ... tgatttttagACTTCAAGTCGGAATTCGAAAAGGCTGTGAGTGTGGTAGGCGACTCTTCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCATAGCTGCAAGCTTGATATAAGCAACTGCTCACCTGATCAACTAAGTAAAATGCAAGgtaaaccgtttctgatctcaatagctcatctataatcgaattttgttacacataaaagaatttcactatgcttctaatcaatcctagaaaacagtctaaa

- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaat