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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGACTGCATCTGTCGTTCTTGCTGGGGTCGTGGCAGCCTTGAAGCTCATTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAGgtatttgccccttttctgacttcatatttatgcatctttccatgttgctgaagcaaagggaaacaaccagtggaatagaatgagtagtacatagtttgaa...

Basic information

species Glycine max
transcript GLYMA16G08460.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19348065|gb|BM892597.1|BM892597
EST:     TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAG                         GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
genomic: TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAGgtatttgccc ... tgttgtttagGCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
EST: gi|19453158|gb|BM954568.1|BM954568
EST:     TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAG                         GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
genomic: TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAGgtatttgccc ... tgttgtttagGCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
EST: gi|15203110|gb|BI425878.1|BI425878
EST:     GGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAG                         GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
genomic: GGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAGgtatttgccc ... tgttgtttagGCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
EST: gi|14990386|gb|BI316059.1|BI316059
EST:     TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAG                         GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
genomic: TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAGgtatttgccc ... tgttgtttagGCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
EST: gi|19053118|gb|BM731785.1|BM731785
EST:     TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAG                         GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
genomic: TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAGgtatttgccc ... tgttgtttagGCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
EST: gi|6566798|gb|AW234430.1|AW234430
EST:     TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAG                         GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
genomic: TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAGgtatttgccc ... tgttgtttagGCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
EST: gi|6341574|gb|AW164398.1|AW164398
EST:     TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAG                         GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCGAAGCAG
genomic: TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAGgtatttgccc ... tgttgtttagGCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
EST: gi|298199413|gb|HO042776.1|HO042776
EST:     GGGGCTGGAGAG                         GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
genomic: GGGGCTGGAGAGgtatttgccc ... tgttgtttagGCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
EST: gi|208341298|gb|GE138994.1|GE138994
EST:     TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAG                         GCTGGAACTGGAATAGCNGAACTA-TAGCTCTTGAGATGTCAAAGCAG
genomic: TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAGgtatttgccc ... tgttgtttagGCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
EST: gi|7326720|gb|AW620518.1|AW620518
EST:     TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAG                         GCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG
genomic: TTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAGgtatttgccc ... tgttgtttagGCTGGAACTGGAATAGCAGAACTAATAGCTCTTGAGATGTCAAAGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGACTGCATCTGTCGTTCTTGCTGGGGTCGTGGCAGCCTTGAAGCTCATTGGCGGTAATCTGGCTGACCACACATTCTTGTTCCTTGGGGCTGGAGAGgtatttgccccttttctgacttcatatttatgcatctttccatgttgctgaagcaaagggaaacaaccagtggaatagaatgagtagtacatagtttgaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA