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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCAACAAGGGCATAGTACCCTTCTTAATATGCCTTCTCTTGTTGGGGGAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAGgtgcttcttgtgtatcaaatttgtcttcactttgcttattggttctttattggaagattcattatgtccaacaaaattgagttgtctagcctaaacatgc...

Basic information

species Glycine max
transcript GLYMA16G04690.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04690.2 (Glycine max), 5'ss of exon 11
lower sequence: AT5G18230.1 (Arabidopsis thaliana), 5'ss of exon 10
AGTGCAACAAGGGCATAGTACCCTTCTTAATATGCCTTCTCTTGTTGGGGGAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAGgt-gcttcttgtgtatcaaatttgtcttcactttgcttattggttctttattggaagattcattatgtccaacaaaattgagttgtctagcctaaacatgc-
||| || ||||| ||| ||| |||  |    || |||||| |   ||| |||||| | |||||||||||| | || ||||||||||| ||||| |||||||| || | ||   |||  |||      |||| | ||||| | ||  |  |    |   | ||| || |  |   | |||   || ||||  ||     |   
AGTACAGCAAGGCCATGGTAACCTCTTAGGCATACCTTCTTTATCTGGAGGAAACGAGAAGCAGTTTTCTTCACAACAGCAAAATCCTCTTTTACAGCAGgtagcatattcaatatggaat----aatcacat-gcttaatagtattcaa---aacattccatcatattaa--gagattatcttttctaatctgtttctcag

upper sequence: GLYMA16G04690.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 10
AGTGCAACAAGGGCATAGTACCCTTCTTAATATGCCTTCTCTTGTTGGGGGAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAGgtgct-tcttgtgtatcaaatttgtcttcactttgcttattggttctttattggaagattcattatgtccaacaaaattgagttgtctagcctaaacatgc-------
   |||||||   || |||||| |||||  ||||||  |||||  ||| ||||| ||||||||||| ||||| || |||||||| || || |||||||||||||| | |  ||| |  ||||    | || |||  |||||  || |||||  ||   ||    ||   | |   | |||  || | | || ||  | | |       
GCAGCAACAAACTCAGAGTACCATTCTTGGTATGCCCCCTCTTTCTGGAGGAAATCATAAGCAGTTCTCTGCACAACAGCAAAACCCACTCTTGCAGCAGgtgctatttcttgttttgaatta---tccaattt--ttatt--ttttttatgagactgttttgaattatctatttatttgt-ttattttgcttatgcttccaagttgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19934716|gb|BQ079746.1|BQ079746
EST:     GAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAG                         TTTAACTCTCATGGCTCATCTGTTTCTTCTCAATCTGGTATTGGACTTGGG
genomic: GAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAGgtgcttcttg ... atctgtgcagTTTAACTCTCATGGCTCATCTGTTTCTTCTCAATCTGGTATTGGACTTGGG