Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCAGAAGTAGAAATTTGTGCAAGCATGTTGGACGCATTGAATGAATGCATACAGgtttgtaacattcatctatccaggtggaagatttgtacactcatctttttattggaattatattacagttctgttatatacattctcatttaccttctgt...

Basic information

species Glycine max
transcript GLYMA16G04400.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04400.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G033619_T01 (Zea mays), 5'ss of exon 10
GAGCCAGAAGTAGAAATTTGTGCAAGCATGTTGGACGCATTGAATGAATGCATACAGgtttgtaacattcatctatccaggtggaagatttgtacactcatctttttattggaattatattacagtt-ctg-ttatatacattctcatttaccttctgt
|| || ||   | ||||||||||||||||  ||||  ||||||||||||  |||||||||||||| | |   ||     | |    | | | | || | ||      ||     ||  || | |  | ||| |||| |  | |    ||| | |     
GAACCTGAGCCACAAATTTGTGCAAGCATACTGGAATCATTGAATGAATCTATACAGgtttgtaatactgtacttgtatgatatttgttatttgcattgatgaaaagatctcgttttcatgagaactgctgcttatctcaactagagttttcatgtc--

upper sequence: GLYMA16G04400.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0007g07240.t01 (Vitis vinifera), 5'ss of exon 11
GAGCCAGAAGTAGAAATTTGTGCAAGCATGTTGGACGCATTGAATGAATGCATACAGgtttgtaacattcatctatccaggtggaagatttgtacactcatctttttattggaattatattacagttctgt-tatatacattctcatttaccttctgt---
||||| ||   ||| || |||||||||||||||||  | |||||||||||||||||||||||  ||||  |   ||    ||   |    | |  |||  |  |||||||   ||| | ||| | |||||  | || | || || ||||  ||| |     
GAGCCTGAGACAGAGATCTGTGCAAGCATGTTGGATTCGTTGAATGAATGCATACAGgtttgctacatctactcat--gagttttatgggtattaactgtttattttatt--tattcttttagaattctgcctctagaaatgcttatttcacttattcccg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12690810|gb|BG157146.1|BG157146
EST:     AAGTAGAAATTTGTGCAAGCATGTTGGACGCATTGAATGAATGCATACAG                         GTCTCTGAATCACATCTAGATGAAAAGCAAGTTCGGAGCATTGTTGATGAG
genomic: AAGTAGAAATTTGTGCAAGCATGTTGGACGCATTGAATGAATGCATACAGgtttgtaaca ... ttgctttcagGTCTCTGAATCACATCTAGATGAAAAGCAAGTTCGGAGCATTGTTGATGAG