Sequence
atgc intronic sequence ATGC exonic sequenceTGTGGAGTGTTGCTTGCAAGAGAAAGTTTTTAACAAGTATTATACAGTGCTGGCTTCCAAGTTATGCGAGCATGACAAAAATCACAAGTTTACTCTACAGgtattgattttctctccttgtaggatttagataagaactaaattgtagaattgtgtagtatttgcttcatgagtcaaaacagttacattttataactact...
Basic information
species | Glycine max |
transcript | GLYMA16G04250.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G04250.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G17930.1 (Arabidopsis thaliana), 5'ss of exon 12
TGTGGAGTGTTGCTTGCAAGAGAAAGTTTTTAACAAGTATTATACAGTGCTGGCTTCCAAGTTATGCGAGCATGACAAAAATCACAAGTTTACTCTACAGgtattgattttctctccttgtaggatttagataagaactaaattgtagaattgtgtagtatttgcttcatgagtcaaaacagttacattttataactact
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AGTTGAATGCTGTTTACAGGAGAAAGCATTCAACAAGTTCTACACAGTCCTTGCTTCAAAGTTGTGCGAGCACGACAAAAATCATAAGTTTACACTGCAGgtac-gtttttactatctaatagaaccgaagccatggttatgt-----aaccattcttttttctcttatcatctcttgtgttttttttcctgcag-----
upper sequence: GLYMA16G04250.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0056g01280.t01 (Vitis vinifera), 5'ss of exon 10
TGTGGAGTGTTGCTTGCAAGAGAAAGTTTTTAACAAGTATTATACAGTGCTGGCTTCCAAGTTATGCGAGCATGACAAAAATCACAAGTTTACTCTACAGgtattgattttctctccttgtaggatt----tagataagaactaaattgtagaattgtgtagtatttgcttcatgagtcaaaacagttacatttt--ataactact
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TCTAGAATGCTGTTTACGAGAGAAAGCATTTAACAAATATTACACTGTTCTGGCTTTGAAATTATGTGAACATGACAAAAACCAGAAGTTTACTTTGCAGgtactccatttgactataagtaagcagacaatagattggagaaaaaatggaataatctagaaaatacacttca-gtggcaaaagtgctgcattcttcataa-----
upper sequence: GLYMA16G04250.1 (Glycine max), 5'ss of exon 11
lower sequence: EFJ18418 (Selaginella moellendorffii), 5'ss of exon 10
TGTGGAGTGTTGCTTGCAAGAGAAAGTTTTTAACAAGTATTATACAGTGCTGGCTTCCAAGTTATGCGAGCATGACAAAAATCACAAGTTTACTCTACAGgtattgattttctctccttgtaggatttagataagaactaaattgtagaattgtgtagtatttgcttcatgagtcaaaacagttacattttataactact
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CCTCGAATGCTGCCTCCAAGAGAAAGTTTTCAACAAGTATTACGCACTGCTGGCTTCCAAATTATGTCACCATGACAAAAACCACAGATTCACCTTACAGgtagaaaaaa---------atcgaagcggaaaaaggctaaaagtccttttctttgcag------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192301276|gb|FG990196.1|FG990196EST: TGGCTTCCAAGTTATGCGAGCATGACAAAAATCACAAGTTTACTCTACAG TTTTGCCTGTGGGACCAGTTTAAGGACCTGGGGTCAATGCCGCTAATGAGG
genomic: TGGCTTCCAAGTTATGCGAGCATGACAAAAATCACAAGTTTACTCTACAGgtattgattt ... ttatttgcagTTTTGCCTGTGGGACCAGTTTAAGGACCTGGAGTCAATGCCGCTAATGAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTGGAGTGTTGCTTGCAAGAGAAAGTTTTTAACAAGTATTATACAGTGCTGGCTTCCAAGTTATGCGAGCATGACAAAAATCACAAGTTTACTCTACAGgtattgattttctctccttgtaggatttagataagaactaaattgtagaattgtgtagtatttgcttcatgagtcaaaacagttacattttataactact
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