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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGACCTCCAGATTGCTACTGGAAGCTTCAGCGTGGAGCAACTTCTTGGTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAGgtattccatacctgttgtttgctgtaaatacacctctatatctaatgctggtagcagagatatgtaattccaaaatagaattgtcacattatataatttt...

Basic information

species Glycine max
transcript GLYMA16G01790.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01790.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G53730.2 (Arabidopsis thaliana), 5'ss of exon 11
AGCTGACCTCCAGATTGCTACTGGAAGCTTCAGCGTGGAGCAACTTCTTGGTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAGgtattccatacctgttgtttgctgtaaataca-cctctatatctaatgctggtagcagagatatgtaattccaaaatagaattgtcacattatataatttt
 || || ||||| ||||||||||| || |||||||| ||  | |||||||| || ||| |||||||||| |||||| | ||| | |||||||| |||||||||    ||     |  | |  |||||    |  |||||| |||     || |  || |   ||||  ||  ||||       |||  ||  | ||     
TGCAGATCTCCAAATTGCTACTGGCAGTTTCAGCGTAGATAATCTTCTTGGAGAAGGGACTTTTGGACGAGTATACAGAGCTGAGTTTGATGATGGAAAGgtaagatattataatattgttatgtaatcctaatctctatgtctcg-aatgatgtcata---atgttgttggaaaa------cgtcttatcttttag----

upper sequence: GLYMA16G01790.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv09s0002g00150.t01 (Vitis vinifera), 5'ss of exon 11
AGCTGACCTCCAGATTGCTACTGGAAGCTTCAGCGTGGAGCAACTTCTTGGTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAGgtat-tccatacctgttgtttgctgtaa-atacacctctata-tctaatgctggtagcagagatatgtaattccaaaatagaattgtcacattatataatttt
 || ||||| ||||| ||||| || ||||| || || ||  | ||| |||||||||||||||||||||| || || |  |||||||||||||| |||||||||  |   |   |  | |||    |     |  |  || || | | ||||  ||   |   ||   ||  ||| ||   | |  |   |||| |    ||||
TGCAGACCTACAGATGGCTACAGGTAGCTTTAGTGTCGAAAACCTTATTGGTGAGGGGTCTTTTGGACGTGTTTATCAGGCTCAATTTGATGATGGAAAGgtacatatttgtttaatatttttcatgttgcatgctgctgtagtgtcatgcatgttttacttatccctatatcctaagctgcaaag---catttttggttttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15813078|gb|BI785353.1|BI785353
EST:     GTGATGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAG                         GTTCTTGCCGTGAAGAAGATCGATTCATCTGTCCTTCCCAATGATATGTCT
genomic: GTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAGgtattccata ... aatgttgtagGTTCTTGCCGTGAAGAAGATCGATTCATCTGTCCTTCCCAATGATATGTCT
EST: gi|15814309|gb|BI786584.1|BI786584
EST:     GTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAG                         GTTCTTGCCGTGAAGAAGATCGATTCATCTGTCCTTCCCAATGATATGTCT
genomic: GTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAGgtattccata ... aatgttgtagGTTCTTGCCGTGAAGAAGATCGATTCATCTGTCCTTCCCAATGATATGTCT
EST: gi|7588179|gb|AW703980.1|AW703980
EST:     GTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAA                         GTTCTTGCCGTGAAGAAGATCGATTCATCTGTCCTGTCC-AATGATATGTC
genomic: GTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAGgtattccata ... aatgttgtagGTTCTTGCCGTGAAGAAGATCGATTCATCTGTCCT-TCCCAATGATATGTC
EST: gi|24136261|gb|BU926771.1|BU926771
EST:     GTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAG                         GTTCTTGCCGTGAAGAAGATCGATTCATCTGTCCTTCCCAATGATATGTCT
genomic: GTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAGgtattccata ... aatgttgtagGTTCTTGCCGTGAAGAAGATCGATTCATCTGTCCTTCCCAATGATATGTCT
EST: gi|254326942|gb|GR836551.1|GR836551
EST:     GTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAG                         GTTCTTGCCGTGAAGAAGATCGATTCATCTGTCCTTCCCAATGATATGTCT
genomic: GTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAGgtattccata ... aatgttgtagGTTCTTGCCGTGAAGAAGATCGATTCATCTGTCCTTCCCAATGATATGTCT
EST: gi|208274637|gb|GE067107.1|GE067107
EST:     GTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAG                         GTTCTTGCCGTGAAGAAGATCGATTCATCTGTCCTTCCCAATGATATGTCT
genomic: GTGAGGGGTCTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAGgtattccata ... aatgttgtagGTTCTTGCCGTGAAGAAGATCGATTCATCTGTCCTTCCCAATGATATGTCT
EST: gi|193558463|gb|FK515324.1|FK515324
EST:     CTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAG                         GTTCTTGCCGTGAAGAAGATCGATTCATCTGTCCTTCCCAATGATATGTCT
genomic: CTTTTGGACGCGTATACCGTGCTCAATTTGATGACGGAAAGgtattccata ... aatgttgtagGTTCTTGCCGTGAAGAAGATCGATTCATCTGTCCTTCCCAATGATATGTCT