1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CTTCTGGTGCTAAAGAAGTTTCGGCATCCTCCAAGGCCAAGGTTGCAGCAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAGgtagtttattgaagaagtcctgaaatttttatgtttctgaaattttattagatgacacttctgtttcaagcaaaaatcaaagaccattttttggaccatg...
species | Glycine max |
transcript | GLYMA16G00590.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAG GTCACAGCTTCACGGTTATTATTATCAAAACAAACTATCCCTCATTACTATEST: gi|208209777|gb|GE007716.1|GE007716
genomic: CAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAGgtagtttatt ... atttttacagGTCACAGCTTCACGGTTATTATTATCAAAACAAACTATCCCTCATTACTAT
EST: GACATTCCTGTCTCTCAGATACGGAAG GTCACAGCTTCACGGTTATTATTATCAAAACAAACTATCCCTCATTACTATEST: gi|208331851|gb|GE130688.1|GE130688
genomic: GACATTCCTGTCTCTCAGATACGGAAGgtagtttatt ... atttttacagGTCACAGCTTCACGGTTATTATTATCAAAACAAACTATCCCTCATTACTAT
EST: CAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAG GTCACAGCTTCACGGTTATTATTATCAAAACAAACTATCCCTCATTACTATEST: gi|4285811|gb|AI440957.1|AI440957
genomic: CAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAGgtagtttatt ... atttttacagGTCACAGCTTCACGGTTATTATTATCAAAACAAACTATCCCTCATTACTAT
EST: CAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAG GTCACAGCTTCACGGTTATTATTATCAAAACAAACTATCCCTCATTACTAT
genomic: CAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAGgtagtttatt ... atttttacagGTCACAGCTTCACGGTTATTATTATCAAAACAAACTATCCCTCATTACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTGGTGCTAAAGAAGTTTCGGCATCCTCCAAGGCCAAGGTTGCAGCAGATGCAGCATTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAGgtagtttattgaagaagtcctgaaatttttatgtttctgaaattttattagatgacacttctgtttcaagcaaaaatcaaagaccattttttggaccatg
- - - - - - - - - - - - - - - - - - - - - - - - CAGATG