Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTGAACTGAACACTATTACTCGGTGCATCTTCCATGAGGATGATGACAAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTGgtattttgtttacccttgtttttatgaagtactctctagtttatgattagtatgagtaccgaacttccttgaatttttgttgtttggcctataacag

Basic information

species Glycine max
transcript GLYMA15G43170.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193677906|gb|FK614992.1|FK614992
EST:     AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTG                         GTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGG
genomic: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTGgtattttgtt ... cctataacagGTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGG
EST: gi|193475387|gb|FK441132.1|FK441132
EST:     AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTG                         GTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGG
genomic: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTGgtattttgtt ... cctataacagGTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGG
EST: gi|208292959|gb|GE089839.1|GE089839
EST:     AGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTAG                         GTACATACCAG
genomic: AGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACT-Ggtattttgtt ... cctataacagGTACATACCAG
EST: gi|208322288|gb|GE124765.1|GE124765
EST:     AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTG                         GTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGG
genomic: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTGgtattttgtt ... cctataacagGTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGG
EST: gi|207768691|gb|GD740502.1|GD740502
EST:     AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTG                         GTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGG
genomic: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTGgtattttgtt ... cctataacagGTACATACCAGTCATACCATTGGTTCTTGTCAATGGTAGTGAAGGAATTGG
EST: gi|193423835|gb|FK387724.1|FK387724
EST:     AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTG                         GTAACATACCA
genomic: AAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTGgtattttgtt ... cctataacagGTA-CATACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACACTGAACTGAACACTATTACTCGGTGCATCTTCCATGAGGATGATGACAAGCTTCTTGAATACTTGAATGAGGATGGAAGGTGTATTGAGCCAAACTGgtattttgtttacccttgtttttatgaagtactctctagtttatgattagtatgagtaccgaacttccttgaatttttgttgtttggcctataacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG