1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GTATTGGGAGCCAACTTATGAGGATACAATGAATCTAATTGCTCGTTTGCCAGCCATTGCTGCTTATATTTATCGACGgtatgtaaagcatatcatcctaatcaatattacacatttaataagcaatgggatatatatatatatatatatatatatatatatatcatatattgtgtgatgacagtgatcaaaagtgtttgacagattttttctatcttcgtacatttgtattgacttgttaacctattttaaag
species | Glycine max |
transcript | GLYMA15G42300.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATGAATCTAATTGCTCGTTTGCCAGCCATTGCTGCTTATATTTATCGACG GAAATACAAG-ATGGAAAA-TCATACCGCTGGATGATTCEST: gi|151408594|gb|EV278402.1|EV278402
genomic: ATGAATCTAATTGCTCGTTTGCCAGCCATTGCTGCTTATATTTATCGACGgtatgtaaag ... tattttaaagGAAATACAAGGATGGAAAAATCATACCGTTGGATGATTC
EST: ATGAATCTAATTGCTCGTTTGCCAGCCATTGCTGCTTATATTTATCGACG GAAATACAAGGATGGAAAAATCATACCGTTGGATGATTCTTTGGATTATGGEST: gi|208209735|gb|GE007702.1|GE007702
genomic: ATGAATCTAATTGCTCGTTTGCCAGCCATTGCTGCTTATATTTATCGACGgtatgtaaag ... tattttaaagGAAATACAAGGATGGAAAAATCATACCGTTGGATGATTCTTTGGATTATGG
EST: ATGAATCTAATTGCTCGTTTGCCAGCCATTGCTGCTTATATTTATCGACG GAAATACAAGGATGGAAAAATCATACCGTTGGATGATTCTTTGGATTATGG
genomic: ATGAATCTAATTGCTCGTTTGCCAGCCATTGCTGCTTATATTTATCGACGgtatgtaaag ... tattttaaagGAAATACAAGGATGGAAAAATCATACCGTTGGATGATTCTTTGGATTATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTGGGAGCCAACTTATGAGGATACAATGAATCTAATTGCTCGTTTGCCAGCCATTGCTGCTTATATTTATCGACGgtatgtaaagcatatcatcctaatcaatattacacatttaataagcaatgggatatatatatatatatatatatatatatatatatcatatattgtgtgatgacagtgatcaaaagtgtttgacagattttttctatcttcgtacatttgtattgacttgttaacctattttaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT