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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGgtactaaggtttggtccatttagaatttctcttttctctacgaatgtggttgtgatgatgtgacttgtgctgtggttag

Basic information

species Glycine max
transcript GLYMA15G40110.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G083716_T03 (Zea mays), 5'ss of exon 11
GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGgtactaaggtttggtccatttagaatttctcttttct-ctacgaatgtggttgtgatgatgtgacttgtgctgtggttag---------
||||||||||| || || |  || || || || |||||  | ||||| ||||| |||||||| ||||||||||| |||||||||| |||||||||||    | ||| |  |   | | | || |   | | | ||   |   |   ||    ||   ||| ||     |||           
GTTGGAGCTGAAATAGTAAGGAGGGCCCTGAGCTACCCACTTAAATTGATTGCTAAAAACGCCGGTGTCAATGGCAGTGTTGTCACTGAGAAGgtac---agcttgatt-accaaaagtctcacgcatataccacagttcaaggcatggatctgaatcttatgtaaatgttttctacaccag

upper sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G56500.2 (Arabidopsis thaliana), 5'ss of exon 12
GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGgtactaaggtttggtccattta-gaatttctcttttctctacgaatgtggttgtgatgatgtgacttgtgctgtggttag
||||||||||| ||||| || | |||  | || |||||  |||| ||||| ||||| ||||||||||||||||| || |||||||||||||||||| | |   |   |  |   | | |  | |   |  | |   |  |    |  |   ||| |  || | | || |  ||
GTTGGAGCTGACATTGTTAAGAAAGCATTGAGCTACCCACTGAAGTTAATCGCCAAGAACGCTGGTGTCAATGGCAGCGTTGTCAGTGAGAAGgtaatcaatctccttaaaagaatgcaagtttgagtcttttgatatagaaactaagtcaatg-gcttttttcggttgacag

upper sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 12
GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGgtactaaggt--ttggtccatttagaatttctcttttct----ctacgaatgtgg-ttgtgatgatgtgact-tgtgctgtggttag
|||||||| || ||||| |||||||| || ||||||||| ||||||| || || || || |||||||| ||||| ||||||||||| ||||||||  |||     |  |  |||  |   ||  ||   |||    ||||| | || | ||   | | |||   | | |  ||  |    
GTTGGAGCGGAAATTGTTAAAAGAGCACTGAGTTACCCTCTGAAATTGATAGCTAAGAATGCTGGTGTTAATGGAAGTGTTGTCAGCGAGAAGgttataacaacataagaacatccatgcttattcagctcttgatctacgtaagttgcttaaaaagctgtatttatttattgcag----

upper sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 5'ss of exon 12
GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGgtactaaggtttggtccatttagaatttctcttttctctacga--atgtggttgtgatgatgtgacttgtgctgtggttag
||||||||||||||||| || |||||| | ||||||||| |||| |||||||||||||| |||||||| ||||| ||||| |||||||||||||||  |    |  ||          |   |  | ||| |   |  ||||   |||| |||    |   | ||| |  | ||
GTTGGAGCTGATATTGTCAAGAGAGCTTTGAGTTACCCTCTGAAGTTAATTGCCAAAAATGCTGGTGTTAATGGAAGTGTGGTCAGTGAGAAGgtataatcaatgagtttccaggaggtccatgatctctgtttcatgatgtatatgtgttgaccaaatgggagctttt-tcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16278868|gb|BI943136.1|BI943136
EST:     A-TTAATTGCCCAAAACGCTGGTGTCAATGGTAGTGGTGTCAGTGAGAAG                         GTATTGTCCAGCGAC
genomic: AATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGgtactaaggt ... ctgtggttagGTATTGTCCAGCGAC
EST: gi|16278211|gb|BI942785.1|BI942785
EST:     AATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAA                         GTATTGTTCAGCGACAATCCAAGATATGGATATAATGCTGCC
genomic: AATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGgtactaaggt ... ctgtggttagGTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCC
EST: gi|16995951|gb|BM085323.1|BM085323
EST:     AATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG                         GTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
genomic: AATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGgtactaaggt ... ctgtggttagGTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
EST: gi|7234102|gb|AW569442.1|AW569442
EST:     CAATGGTAGTGTTGTCAGTGAGAAG                         GTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
genomic: CAATGGTAGTGTTGTCAGTGAGAAGgtactaaggt ... ctgtggttagGTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
EST: gi|31475719|gb|CD417747.1|CD417747
EST:     AATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG                         GTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
genomic: AATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGgtactaaggt ... ctgtggttagGTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
EST: gi|8402447|gb|BE058081.1|BE058081
EST:     CAATGGTAGTGTTGTCAGTGAGAAG                         GTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
genomic: CAATGGTAGTGTTGTCAGTGAGAAGgtactaaggt ... ctgtggttagGTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
EST: gi|208148111|gb|GD949727.1|GD949727
EST:     AATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG                         GTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
genomic: AATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGgtactaaggt ... ctgtggttagGTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
EST: gi|208199713|gb|GD999954.1|GD999954
EST:     AATTGCC-AAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG                         GTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
genomic: AATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGgtactaaggt ... ctgtggttagGTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
EST: gi|298170123|gb|HO018747.1|HO018747
EST:     AATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG                         GTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
genomic: AATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGgtactaaggt ... ctgtggttagGTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
EST: gi|31309826|gb|CD395029.1|CD395029
EST:     AATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG                         GTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
genomic: AATTAATTGCCAAAAACGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAGgtactaaggt ... ctgtggttagGTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
EST: gi|6951494|gb|AW423562.1|AW423562
EST:     CAATGGTAGTGTTGTCAGTGAGAAG                         GTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA
genomic: CAATGGTAGTGTTGTCAGTGAGAAGgtactaaggt ... ctgtggttagGTATTGTCCAGCGACAATCCAAGATATGGATATAATGCTGCCACCGGAAAA