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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAACTCAGCAAGCAGTGCGAGAGTCTTCCAAGAGGCGAGTTTGCCTCCAAAGCTCTGAGCCACAGTTTTTTTGTGTATGCACGTGATATGCTTGAGgttagtcatcttatctatgtttctttcttgacctactaaaagcagagcgacgagatcaggattaagaaggattcaggtagagagagaacaatttctttgg...

Basic information

species Glycine max
transcript GLYMA15G13910.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13910.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0166g00300.t01 (Vitis vinifera), 5'ss of exon 13
GGAGGAACTCAGCAAGCAGTGCGAGAGTCTTCCAAGAGGCGAGTTTGCCTCCAAAGCTCTGAGCCACAGTTTTTTTGTGTATGCACGTGATATGCTTGAGgttagtcatcttatctatgttt----ct--ttcttgacctactaaaagcagagcgacgagatcaggattaagaaggattcaggtagagagagaacaatttctttgg
||||||| |||||||||||||| | || ||||||||||| |||||||| || |||||| |||||||||||||   ||||| ||| ||  ||||| |||||||||||  ||||||   || ||    ||  ||||| |  |  | ||              ||    ||| |||  | ||  || | | || ||     | |     
GGAGGAAATCAGCAAGCAGTGCCAAAGCCTTCCAAGAGGAGAGTTTGCTTCAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCAATATGGTTGAGgttagtggtcttattcttgattggggctgattcttaattttttgaatttg--ttttttgtatgcatatttagattgttt--ggaaaatagtgattggatgcaga--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12772188|gb|BG237115.1|BG237115
EST:     CCAAAGCTCTGAGCCACAGNNNNNNNGTGTATGCACGTGATATGCTTGAG                         GCTATCAATTTCTCAAACTTATATGCACCTGAGCATCTAATTATCAATGTG
genomic: CCAAAGCTCTGAGCCACAGTTTTTTTGTGTATGCACGTGATATGCTTGAGgttagtcatc ... catctttcagGCTATCAATTTCTCAAACTTATATGCACCTGAGCATCTAATTATCAATGTG
EST: gi|254340469|gb|GR850771.1|GR850771
EST:     CCAAAGCTCTGAGCCACAGNNNNNNNGTGTATGCACGTGATATGCTTGAG                         GCTATCAATTTCTCAAACTTATATGCA-CTGAGCATCTAATTATCAATGTG
genomic: CCAAAGCTCTGAGCCACAGTTTTTTTGTGTATGCACGTGATATGCTTGAGgttagtcatc ... catctttcagGCTATCAATTTCTCAAACTTATATGCACCTGAGCATCTAATTATCAATGTG