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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCAGTGATGAGTTTAAACGTGTAATCGCATGTCTACGTGGTAACGATGACAAGATACGAGTGGTTTTGAACAAGGCAGACCAAGTTAATACTCAACAAgtaagacaacatcaacataggttacctggtttatcatatttattatctaactttttatctacttacatgcctaattataatattgtag

Basic information

species Glycine max
transcript GLYMA15G11970.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11970.1 (Glycine max), 5'ss of exon 11
lower sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 12
CATCAGTGATGAGTTTAAACGTGTAATCGCATGTCTACGTGGTAACGATGACAAGATACGAGTGGTTTTGAACAAGGCAGACCAAGTTAATACTCAACAAgtaagacaacatcaacataggttacctggtttatcatatttattatctaactttttatctacttacatgcctaattataatattgtag
|||||||||||| || |||||||| ||  ||| |||||||||||| || |||||||| || || || || ||||| || ||||||||| ||||||||||||||||      ||    | |      |  ||| | || || || | ||   ||||||   | |     |||   || |  ||  |   
CATCAGTGATGAATTCAAACGTGTGATAACATCTCTACGTGGTAATGAAGACAAGATCCGTGTTGTCTTAAACAAAGCTGACCAAGTTGATACTCAACAAgtaagtt----tcgttttcgtcccattcatttgttatgttcataagcttcatttttactcattgttgagcc-gctttttctaaag---

upper sequence: GLYMA15G11970.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv00s0516g00020.t01 (Vitis vinifera), 5'ss of exon 13
CATCAGTGATGAGTTTAAACGTGTAATCGCATGTCTACGTGGTAACGATGACAAGATACGAGTGGTTTTGAACAAGGCAGACCAAGTTAATACTCAACAAgtaaga----caac----atcaacataggttacctggtttatcatatttattatctaac-----------tttttatctacttacatgcctaa---ttataatattgtag
 ||||||||||| ||||| ||||| || |||| |||||||||||| |||||||||||||| || ||||||||||| || || |||||  |||| ||||||||| ||    ||||    |||  | ||  || | |   |  |||||||||   | |  |           |  | || |  | || ||  |     || | ||| | |||
TATCAGTGATGAATTTAAGCGTGTGATTGCATCTCTACGTGGTAATGATGACAAGATACGTGTAGTTTTGAACAAAGCTGATCAAGTCGATACACAACAAgtaggatttacaactgttatcctcttatttttcattcctcttcatatttaccttttctcccagcaattgatcctcatttcttgacttgattgcatcttgttatactatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023291|gb|CX710032.1|CX710032
EST:     ACAAGATACGAGTGGTTTTGAACAAGGCAGACCAAGTTAATACTCAACAA                         CTTATGAGAGTTTATGGAGCATTGATGTGGTCACTGGGTAAAGTTCTAAAT
genomic: ACAAGATACGAGTGGTTTTGAACAAGGCAGACCAAGTTAATACTCAACAAgtaagacaac ... aatattgtagCTTATGAGAGTTTATGGAGCATTGATGTGGTCACTGGGTAAAGTTCTAAAT
EST: gi|58023596|gb|CX710337.1|CX710337
EST:     ACAAGATACGAGTGGTTTTGAACAAGGCAGACCAAGTTAATACTCAACAA                         CTTATGAGAGTTTATGGAGCATTGATGTGGTCACTGGGTAAAGTTCTAAAT
genomic: ACAAGATACGAGTGGTTTTGAACAAGGCAGACCAAGTTAATACTCAACAAgtaagacaac ... aatattgtagCTTATGAGAGTTTATGGAGCATTGATGTGGTCACTGGGTAAAGTTCTAAAT