Sequence
atgc intronic sequence ATGC exonic sequenceCAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGTGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTACGATAGTGACTGgtcagtatttcaagtagttatggactcagccatctgatttatatctgtaccaaaattattttgttgatggttggtgcttttacaacag
Basic information
species | Glycine max |
transcript | GLYMA15G10370.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 5'ss of exon 11
CAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGTGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTACGATAGTGACTGgtcagt--atttcaagtagttatggactcagccatctgatttatatctgtaccaaaattattttgttgatggttggt-gcttttacaacag
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CAGGGAGTGAAAAATTTGTTTTCTTGCTTTCGACTAGGGCAGGTGGTCTTGGGATAAATCTTGCTACTGCTGATGTTGTTATTCTTTATGACAGTGACTGgtatgtccttttcaaatcgtaattttttc--tcattctaca---atttgtg---aagttaaa--ggttatggttatttggtttcacag---
upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G06400.3 (Arabidopsis thaliana), 5'ss of exon 11
CAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGTGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTACGATAGTGACTGgtcagtatttcaagtagttatggactcagccatctgatttatatctgtaccaaaattattttgttgatggttggtgcttttacaacag
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CAGGAAGTGAGAAATTTGTTTTCTTGTTATCTACTAGAGCTGGAGGGCTTGGTATCAATCTTGCTACTGCAGATGTTGTGATCCTTTACGATAGTGATTGgtaagtctctca--tcattgtccactgtagtttatgaactttctcttcacg--------tttgacga-gtctggca-tattctggcag
upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 11
CAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGTGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTACGATAGTGACTGgtcagtatttcaagtagttatggactcagccatctgatttatatctgtaccaaaattattttgttgatggttggtgcttttacaacag
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CAGGAAGTGAGAAATTCGTTTTCTTGTTATCCACTAGAGCTGGAGGACTTGGTATCAATCTTGCTACTGCAGATGTTGTGATCCTCTATGATAGTGACTGgtaaggctct-------ttttgtgtccat---tgtaatttatgagtgttttcttttatgcctaatga-ggtgggtggatt-atggcag
upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 11
CAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGTGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTACGATAGTGACTGgtcagtatttcaagtagttatggactcagccatctgatttatatctgtaccaaaattat-tttgttgat--ggttggtgcttttacaacag-----
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CCGGAAGTGAGAAATTTGTGTTCTTACTGTCAACTAGAGCTGGAGGTCTTGGTATCAATCTTGCTACTGCAGATGTTGTCATCCTTTATGACAGTGACTGgtgagcatttctccatttttttttctttttcttttagaatgctagggaattgttatattatttaccaatctggttgatctctttattgcaccgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6069767|gb|AW099383.1|AW099383EST: GGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTACGATAGTGACTG GAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCA
genomic: GGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTACGATAGTGACTGgtcagtattt ... tttacaacagGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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CAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGTGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTACGATAGTGACTGgtcagtatttcaagtagttatggactcagccatctgatttatatctgtaccaaaattattttgttgatggttggtgcttttacaacag
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