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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATGgtatattttctgttaatcaaagtaaaattagcatccagttcttatagtaataaggagaattcagagtatttaattatttttattttaatttgatgaagctctttgtatagatgccaaaagtattactgatttttatttatttatttctacaatcattttag

Basic information

species Glycine max
transcript GLYMA15G06100.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06100.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 11
GAATCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATGgtatattttctgttaatcaaagtaaa-attagcatccagttcttatagtaataaggagaattcagagtatttaattatttttattttaatttgatgaagctctttgtatagatgccaaaagtattactgatttttatttatttatttctacaatcattttag
|| ||||||||||| || |||||||| ||||||||| | ||||||||||||||||||  ||||        ||||| |  |||    |  || |    ||  | | |  |   |  |   || |   || ||   |||| |  |   |  | || |      | |||  ||||||     | | |||||  |  || ||||              
GAGTCTGGCCAAATCTCAGTCACTGATTATGTCCGGATAACAAGCACTGAATGgtatgctttc--------aaagtgatcatttatgtagaggttccctaa-actgaaaaatgtataagatagtgtgtt-ttacaatttaatctcagtttacctatcaaaccatatgg-aaaagtgagtttaacttttacattattttttcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016987|gb|CX703729.1|CX703729
EST:     TCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATG                         TGCTAGAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATC
genomic: TCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATGgtatattttc ... atcattttagTGCTAGAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATC
EST: gi|16349229|gb|BI974824.1|BI974824
EST:     AATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATG                         TGCTAGAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATC
genomic: AATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATGgtatattttc ... atcattttagTGCTAGAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATC
EST: gi|37995958|gb|CF807547.1|CF807547
EST:     TCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATG                         TGCTAGAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATC
genomic: TCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATGgtatattttc ... atcattttagTGCTAGAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATC
EST: gi|27445929|gb|CA953052.1|CA953052
EST:     TCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATG                         TGCTAGAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATC
genomic: TCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATGgtatattttc ... atcattttagTGCTAGAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATC
EST: gi|298175277|gb|HO018158.1|HO018158
EST:     TCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATG                         TGCTAGAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATC
genomic: TCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATGgtatattttc ... atcattttagTGCTAGAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATC
EST: gi|14991023|gb|BI316696.1|BI316696
EST:     TCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATG                         TGCTAGAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATC
genomic: TCTGGCCAAATATCTGTCACTGACTATGTCCGGTTGACAAGCACTGAATGgtatattttc ... atcattttagTGCTAGAATCTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATC