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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTCGAAGTTTCTGTTATGTCTCTGACCTGgtaaatgtcccataatctatgtatctttaaattactacctgaatagctgaatgtgattatgaatttatgatatttatgagatgtcttag

Basic information

species Glycine max
transcript GLYMA15G04500.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 11
lower sequence: AT2G28760.2 (Arabidopsis thaliana), 5'ss of exon 8
GGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTCGAAGTTTCTGTTATGTCTCTGACCTGgtaaatgt-cccataatctat-gtatctt-taaattactacct----gaatagctgaatgtgattatgaatttatgatatttatgagatgtcttag-----
||| ||| |  |||| || ||    |||||||||||||| || |||||||||||||| || ||| |||||  |||  |||| || ||| | | |    || | | || ||    ||| |    |||||    |   | |  | |||     || ||   || |     
GGGAGAAGCTCTGACTGTTCAGAAACCGGGAACACAAACCCGCAGTTTCTGTTATGTTTCGGACATGgtatgtgtgtccatcatatatagcagcaagcaactcattatctttacgaaaataacaatgtaga-acagaatggtaataaaagagaaataaatttgaaacc

upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 10
GGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTCGAAGTTTCTGTTATGTCTCTGACCTGgtaaatgtc--ccataatctatgtatctttaaattactacctgaatagctgaatgtgattatgaatttatgat-----atttatgagatgtcttag
 || ||||| |||||||| ||   ||| |||||||| ||||| |||||||| |||||||||||| |||||          || ||   | |||    | |  | |  |    ||  ||  | | |||| || | | |||      ||||     ||||   ||
TGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATGgtatgcaaaaataattataattttatgaccataggattgaccatgta-ttggttattattaagattatttgaagcccaattttcttcatgttaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231271|gb|BE800168.1|BE800168
EST:     TCCAATGTCCGGGAACACAAACTCGAAGTTTCTGTTATGTCTCTGACCTG                         GTTGATGGCCTTATCCGTCTCATGGAAGGATCAAACACCGGACCAATCAAC
genomic: TCCAATGTCCGGGAACACAAACTCGAAGTTTCTGTTATGTCTCTGACCTGgtaaatgtcc ... gatgtcttagGTTGATGGCCTTATCCGTCTCATGGAAGGATCAAACACCGGACCAATCAAC
EST: gi|22928257|gb|BU545396.1|BU545396
EST:     TCCAATGTCCGGGAACACAAACTCGAAGTTTCTGTTATGTCTCTGACCTG                         GTTGATGNNNNNATCCGTCTCATGGAAGGATCAAACACCGGACCAATCAAC
genomic: TCCAATGTCCGGGAACACAAACTCGAAGTTTCTGTTATGTCTCTGACCTGgtaaatgtcc ... gatgtcttagGTTGATGGCCTTATCCGTCTCATGGAAGGATCAAACACCGGACCAATCAAC
EST: gi|192296657|gb|FG991225.1|FG991225
EST:     TCCAATGTCCGG-A-CACAAACTCGAAGTTTCTGTTATGTCTCTGACCTG                         GT-GATGGCCT-ATCCGTCT
genomic: TCCAATGTCCGGGAACACAAACTCGAAGTTTCTGTTATGTCTCTGACCTGgtaaatgtcc ... gatgtcttagGTTGATGGCCTTATCCGTCT