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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTTGCAGTCACTCAACCCCTGAATTCTATAGCATTTGTTTTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattttcttccattttttaatgttacatggtattatgataaatggcatattcagccttctgcactaaatattaaggactacttcattatggtaactctcag

Basic information

species Glycine max
transcript GLYMA15G03930.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03930.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g02140.t01 (Vitis vinifera), 5'ss of exon 11
TTTGTTGCAGTCACTCAACCCCTGAATTCTATAGCATTTGTTTTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattttcttccattttttaatgttacatggtattatgataaatggcatattcagccttctgcactaaatattaaggactacttcattatggtaactctcag
||||||||||| ||||||||  | || ||| | || |||||||||||||| ||||||||||| |||||||||||||||||||| || |  |||||||| ||| |  |||    |  || | |||||||      | |  | |  |||  ||  ||  |  |   ||    |  || |                         
TTTGTTGCAGTTACTCAACCTATCAACTCTCTGGCCTTTGTTTTTGATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaatctct--tccttgagtgttacacaaatctttcttcatgggctaatcgagattaatcttctttccacaaaag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8402686|gb|BE058320.1|BE058320
EST:     ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG                         GTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTCATTTTGTCATCCGCT
genomic: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTTATTTTGTCATCCGCT
EST: gi|120494990|gb|EH223157.1|EH223157
EST:     TGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG                         GTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTTATTTTGTCATCCGCT
genomic: TGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTTATTTTGTCATCCGCT
EST: gi|120495098|gb|EH223265.1|EH223265
EST:     TGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG                         GTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTTATTTTGTCATCCGCT
genomic: TGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTTATTTTGTCATCCGCT