Sequence
atgc intronic sequence ATGC exonic sequenceTTCTGACCCTTCATGAAATGCTGCCATTGGCTTTTGATTATGCGGGACAGAAGCAATCTGTTAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGgtaagaatctcattgctaatcaaatagtttttcaagagctgatgatatagcttctttctttattgctactttggtaagatatttaatgcatttgagtgtc...
Basic information
species | Glycine max |
transcript | GLYMA15G03820.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G03820.2 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G050484_T01 (Zea mays), 5'ss of exon 11
TTCTGACCCTTCATGAAATGCTGCCATTGGCTTTTGATTATGCGGGACAGAAGCAATCTGTTAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGgta---agaatctcattgctaatcaaatagtttttcaagagctgatgatatagcttctttctttattgctactttggtaagatatttaatgcatttgagtgtc-----
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TCCTCACTTTGCATGAAATGCTGCCTCTTGCATTTGACTATTGTGGCCAGAAGCAAGCTGTCAAAGCTGTCTTTGTGGGCATGGCCTGCATGTCTGCAAGgtttgtcgattcttcaaattaagcaaagggattcct------tgagtaaaca--ttttgtcttaatgaccagtatggatttgctttccctttccgcaaaagactcgta
upper sequence: GLYMA15G03820.2 (Glycine max), 5'ss of exon 11
lower sequence: AT3G20870.1 (Arabidopsis thaliana), 5'ss of exon 11
TTCTGACCCTTCATGAAATGCTGCCATTGGCTTTTGATTATGCGGGACAGAAGCAATCTGTTAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGgtaagaatctcattgctaatcaaatagtttttcaagagctgatgatatagcttctttctttattgctactttggtaagatatttaatgcatttgagtgtc---------
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TCCTAACATTGCACGAAATGCTTCCTTTGGCATTTGATTATGCGGGACAGAAACAAGCTGTGAAAGCTGTGTTTTTTGGCATGGCATGTATGTCTGCGAGgtaaaaatg-caaacctgagaacccatattcataaatctacttgctgtaaa-----acataattgaggccttgaaatagtactt---gcatcctaggattcaacctagt
upper sequence: GLYMA15G03820.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g01860.t01 (Vitis vinifera), 5'ss of exon 11
TTCTGACCCTTCATGAAATGCTGCCATTGGCTTTTGATTATGCGGGACAGAAGCAATCTGTTAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGgtaagaatctcattgctaatcaaatagtttttcaagagctgatgatatagcttctttctttattgctactttggtaagatatttaatgcatttgagtgtc--
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TTCTTACCTTGCATGAAATGCTGCCATTGGCATTTGACTATGCTGGGCCGAAGCAAGCTGTCAAGGCAGTCTTCTTTGGAATGGCTTTCATGTCTGCAAGgtaaaa--tcaactcctagcaggacactctttcagaagccatttaaaaagtttctggtaatttcaatgattttggtagccctacaacctggaagaaaaaaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|214009788|gb|DB990325.1|DB990325EST: AAGCAATCTGTTAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAG CCTGTATTTTCTAAGTATCAGCTTACCTGAGGACTTAAGCTTGTAGGTGGG
genomic: AAGCAATCTGTTAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGgtaagaatct ... ggatatgcagCCTGTATTTTCTAAGTATCAGCTTACCTGAGGACTTAAGCTTGTAGGTGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTGACCCTTCATGAAATGCTGCCATTGGCTTTTGATTATGCGGGACAGAAGCAATCTGTTAAGGCTGTCTTTTTGGGGATGGCTTTCATGTCTGCAAGgtaagaatctcattgctaatcaaatagtttttcaagagctgatgatatagcttctttctttattgctactttggtaagatatttaatgcatttgagtgtc
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA