Sequence
atgc intronic sequence ATGC exonic sequenceATGATTGCATCAGAGGATATAGGAAGGCAGATATTGACTTATGGAGAAAGgtatttaatcaatcagaggcctttctattttttttttctcattcatcaatcacaatttaatttttttccccttaaatcctcctggtgctacttcaattcaagaagcatcacttaaatcatggacctaaattgtaatttgagaatttgtgaggtgacccatttcag
Basic information
species | Glycine max |
transcript | GLYMA15G02390.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G02390.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv09s0002g03200.t01 (Vitis vinifera), 5'ss of exon 11
ATGATTGCATCAGAGGATATAGGAAGGCAGATATTGACTTATGGAGAAAGgtatttaatcaatcagaggcctttctattttttttttctcattcatcaatcacaatttaatttttttccccttaaatcctcctggtgctacttcaattcaagaagcatcact------taaatcatggacctaaattgtaatttgagaatttgtgaggtgacccatttcag
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ATGATTGCATCGGAAGATATAGGGAGACAGATATTGACATATGGAGAGAGgtaattctttca--agatgccatctgaaac------caaagtaaattaatggtagtgcaaagcagaaacaccagaaagaaac--actcgattctaaaccaaaaagcaccttcatgggatgaatcaaagcccttatgtttacagcagaagtgtgtcatgttattt-tctcag
upper sequence: GLYMA15G02390.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv10s0003g03230.t01 (Vitis vinifera), 5'ss of exon 10
ATGATTGCATCAGAGGATATAGGAAGGCAGATATTGACTTATGGAGAAAGgtatttaatcaatcagaggcctttctattttttttttctcattcatcaatcacaatttaatttttttccccttaaatcctcctggtgctacttcaattcaagaagcatcact------taaatcatggacctaaattgtaatttgagaatttgtgaggtgacccatttcag
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ATGATTGCATCGGAAGATATAGGGAGACAGATATTGACATATGGAGAGAGgtaattctttca--agatgccatctgaaac------caaagtaaattaatggtagtgcaaaacagaaacaccagaaagaaac--actcaattctaaaccaaaaagcaccctcatgggatgaatcaaagcccttatgtttacagcagaagtgtgtcatgttattt-tctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33388638|gb|CA851845.1|CA851845EST: CTTATGGAGAAAG GAAGCCACTGGNAGCAGTTCTTTAAGGCAGTAGATGGAATCACTTTGAATG
genomic: CTTATGGAGAAAGgtatttaatc ... cccatttcagGAAGCCACTGG-AGCAGTTCTTTAAGGCAGTAGATGGAATCACTTTGAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGATTGCATCAGAGGATATAGGAAGGCAGATATTGACTTATGGAGAAAGgtatttaatcaatcagaggcctttctattttttttttctcattcatcaatcacaatttaatttttttccccttaaatcctcctggtgctacttcaattcaagaagcatcacttaaatcatggacctaaattgtaatttgagaatttgtgaggtgacccatttcag
- - - - - AGAGGA
- - - - - - GAGGAT
- - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - GGAGAA