Sequence
atgc intronic sequence ATGC exonic sequenceGCAAGTGAAAGACGGTGTGAGGAACTGATTACGCAAGTTCCAGAATCCACAAGGCCTCTTTTAAGGCAAATTGAAGCCATGCAGgttaatacacatgattcagaattacttttccttctgttttttgttttgctgcatgagatctgtactagactagtattcaccttataacag
Basic information
species | Glycine max |
transcript | GLYMA15G01980.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G01980.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os05g48620.1 (Oryza sativa), 5'ss of exon 10
GCAAGTGAAAGACGGTGTGAGGAACTGATTACGCAAGTTCCAGAATCCACAAGGCCTCTTTTAAGGCAAATTGAAGCCATGCAGgt--taatacacatgatt--------------cagaattacttttccttctgttttttgttttg---ctgcatgaga--tctgtactagactagtattcaccttataacag---------------------------------------
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TCCAGTGAACTTCGTTACAATGAACTGGTCACACAAGTTCCTGAATCCACCAGACCACTTCTAAGGCAAATTGAAGCCATGCAGgtactggtgcatttgttttctttcccttgggctgcaattactttgctttct-tcaattatttggagtctggataacacttctgcaatttgtgagttgacctcttttttctgttgtgagctggttaattaattgtgtgctaacattaacag
upper sequence: GLYMA15G01980.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G150257_T01 (Zea mays), 5'ss of exon 5
GCAAGTGAAAGACGGTGTGAGGAACTGATTACGCAAGTTCCAGAATCCACAAGGCCTCTTTTAAGGCAAATTGAAGCCATGCAGgt--taatacacatgattcagaatt--acttttcct-----tctgttt----tttgttttgctg------catgagatctgtactagactagtattc--accttataacag----------------------------------------------
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GCTAGTGAACTTCGTTATAATGAACTGGTGACACAAGTTCCCGAGTCTACCAGACCCCTCCTAAGGCAAATTGAAGCCATGCAGgtattggtccccactcccctgtatttggccttttttaaaaacttgtttcatgtttcttttgttgtttattcttggtctatgtgtcacacttctcttttgattccatattgggcttgcccgcttgttcagttaatcaattgcatgttaatattgacag
upper sequence: GLYMA15G01980.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G168654_T01 (Zea mays), 5'ss of exon 19
GCAAGTGAAAGACGGTGTGAGGAACTGATTACGCAAGTTCCAGAATCCACAAGGCCTCTTTTAAGGCAAATTGAAGCCATGCAGgttaatacacatgattcagaattacttttccttctgttt----tttgttttgctgcatgagatctgtactagactagtattcaccttataacag--------------------------------------------------------
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GCCAGTGAACTTCGTTATAATGAACTGGTAACGCAAGTTCCTGAGTCTACCAGACCGCTTCTAAGACAAATTGAAGCCATGCAGgt-attgtccctgtattttgcttttttgtgaatatgtttcatgtttctttcgttgtttattcttggtctatgcatcacatttcttttttatttccatattgggcgtgtattgcttttttcaatttatcaattgcatgttaatatttgcag
upper sequence: GLYMA15G01980.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 10
GCAAGTGAAAGACGGTGTGAGGAACTGATTACGCAAGTTCCAGAATCCACAAGGCCTCTTTTAAGGCAAATTGAAGCCATGCAGgttaa---------tacacatgattcagaatt-------actttt-----ccttctgttttttgttttgctg------catgagatctgtac-tagactagtattcaccttataacag--------------------
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GCTAGTGAACGTCGGTGTGAGGAGTTGATCACTCAAGTTCCTGAATCTACTAGGCCTCTTTTGAGGCAGATTGAAGCTATGCAGgttgagctttgtttcctatttatttaaagacttgatgaaacttttgagtacactttgctcattggctcgttgatatgttgtgacatatgcacatatgcttggatctcacaatcaactgttatcttctactggtaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208197689|gb|GD998896.1|GD998896EST: AAGTTCCAGAATCCACAAGGCCTCTTTTAAGGCAAATTGAAGCCATGCAG GAAACAAATGCCAGAAAAGCTGAAGCTTGGGCTGCTGTTGAAAGAACTCTT
genomic: AAGTTCCAGAATCCACAAGGCCTCTTTTAAGGCAAATTGAAGCCATGCAGgttaatacac ... cttataacagGAAACAAATGCCAGAAAAGCTGAAGCTTGGGCTGCTGTTGAAAGAACTCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAAGTGAAAGACGGTGTGAGGAACTGATTACGCAAGTTCCAGAATCCACAAGGCCTCTTTTAAGGCAAATTGAAGCCATGCAGgttaatacacatgattcagaattacttttccttctgttttttgttttgctgcatgagatctgtactagactagtattcaccttataacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC