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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGgtaagtttaaaagcttcaggataaacataatgagaaagtgaagttgcctaattgttttacatgtacaaaatgctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaacag

Basic information

species Glycine max
transcript GLYMA15G00250.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os02g04490.1 (Oryza sativa), 5'ss of exon 11
GCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGgtaagtttaaaagcttcaggataaacataatgagaaagtgaagttgcctaattgttttacatgtacaaaatgctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaacag
| ||||||||||| || || || ||||| ||||||||||| ||||| || || ||||| || |||||||| ||||||||||| || ||  | ||||| |||||||      | |||   | | |   |  ||  |   ||        ||  | || ||  | ||||  ||     | |||||     || |                                
GTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGgtaag------accttt--gttgacacttctgttactctgctcacttttagctcttcta-gtttacatgatttctgatgtactttacactcag-------------------------------

upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os06g49130.2 (Oryza sativa), 5'ss of exon 10
GCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGgtaagtttaaaagcttcaggataaacataatgagaaagtgaagttgcctaattgttttacatgtacaaaatgctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaacag
| || |||||||| || |||||  | || ||||||||||| ||||| ||||| ||||| || |||||||| || ||||| |||||||| ||  |  | |||||||   | |   |   | ||  |  |  | |        | | |  |   ||  ||   ||     |||||||    | | | ||   | | | |   || ||  ||               
GTTATATATGGGCTTGCCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACCAAAGTCTGATAAACTGCGTCAGTGgtaagaccatagatt--ggcatctatgttgttatccttgttaatagtgtggctgcatt-tgtggg-gtaatgctc----tgccc-ttggcagcaaaaaaatggtttctg---------------

upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G139977_T02 (Zea mays), 5'ss of exon 4
GCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGgtaagtttaaaagcttcaggataaacataatgagaaagtgaagttgcctaattgttttacatgtacaaaatgctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaacag
| ||||||||||| ||||| || || |||||||||||||| || |||||||| ||||| || ||||| || ||||| ||||||||||| ||  | || |||||||  | | ||   ||   | | | |  ||      | |  |   | |   ||| || ||||     |  | ||                                                
GTTACATATGGGCTTGTCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGATAAACTGCGTGAGTGgtaagccttagagacacaat-tgatcttgttgctt---ttagatcctccaccagttcta-atgtcttttacacccag-----------------------------------------------

upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G470556_T01 (Zea mays), 5'ss of exon 10
GCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGgtaagtttaaaagcttcaggataaacataatgagaaagtgaagttgcctaattgttttacatgtacaaaatgctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaacag
| ||||||||||| || || || || |||||||||||||| || |||||||| ||||| || ||||| || ||||| |||||||| || ||  | || |||||||  | |    | ||   |   | |  ||      |  || | |   |   |||   ||||     |  || |    || ||                                       
GTTACATATGGGCTTGCCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGACAAACTGCGTGAGTGgtaagccttaggtgtccaat-tggtcttgttgct----tttagatcctccaccatttctaatgtcttttactcttatc-cacccag--------------------------------------

upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G55970.1 (Arabidopsis thaliana), 5'ss of exon 10
GCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGgtaagtttaaaagcttcaggataaacataatgagaaagtgaagttgcctaattgttttacatgtacaaaatgctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaacag
|||| |||||||||||||||||| | |||||||| ||||| ||| | || |||||||| ||||| ||||| ||||||||  | || || || |||||||||||    | | |   ||  ||      |  |       |  | |||  |    || |||  |  |     ||  ||     | |||| ||| || |  |  |                      
GCTATATATGGGCATGTCCTCCACTTAAGGGTGACGATTACATTCTTTACTGTCATCCTGAAATCCAGAAGACTCCAAAGACCGACAAACTAAGGGAATGgta----tgaga---tcgcgactgttctgtt-------tttacttgtttgtcagtgttatgtacatttgttgg-cactaatcacattcctaccttt--tcag----------------------

upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G16710.1 (Arabidopsis thaliana), 5'ss of exon 11
GCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGgtaagtttaaaagcttcaggataaacataatgagaaagtgaagttgcctaattgttttacatg-tacaaaatgctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaacag
||||||||||||| ||||| ||| | |||||||| ||||||||  ||||||| ||||| |||||||||||||| ||||| |||||||| ||  ||||||||| ||| |||  |  |  || | |   |  | | | |||     |    || |  |||||||  | |||  |||||  |||   ||                                       
GCTACATATGGGCTTGTCCACCACTGAAGGGTGAGGATTATATCCTATATTGCCATCCAGAAATTCAGAAAACACCAAAGTCTGATAAACTACGGGAATGgtcagtctaattgtctttgg-tgattttcttcatacagttttcgtaggaaaatcctttacatcctccaatttgctcctggtctacacag------------------------------------

upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 11
GCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGgta-agtttaaaagcttcaggataa-acataatgagaaagtgaagttgcctaattgttttacatgtacaaaatgctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaacag
|||| ||||||||||| || ||  | |||||||||||||||||||||||||| ||||| |||||||||||||| |||||  ||||||| || |||||||||||  |  || |  |||     ||| || |  |    | ||| |   |    |   | || ||| || |  ||||  ||  ||||| || ||    |                             
GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGgtatggaatatatactttcctgtaatacttgtttttcacgtgtaagag----agaatattgcatata-atgatgcataa--tactccttccttttcag----------------------------

upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G79000.1 (Arabidopsis thaliana), 5'ss of exon 12
GCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGgtaagtttaaaagc---ttcaggataaacataatgagaaagtgaagttgcctaattgttttacatgtacaaaatgctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaacag
||||||||||||| ||||| ||  | ||||| || |||||||| |||||||||||||| ||||||||||| || |||||||||||||| ||  | || |||| |||| |    |   ||  |||| ||| |  | |  |  |  |  ||   || |  |||||||   | || ||| || | |  | |||   |                                 
GCTACATATGGGCTTGTCCGCCGCTGAAGGGCGAGGATTATATCTTATATTGTCATCCAGAAATTCAGAAGACGCCAAAATCTGATAAACTACGAGAGTGgtcagttcatttacctttttgggatgaacttcgtaa--actttcatatgaaaaagtcatttacatcatccaactgcccacgttg-ttattcgcag--------------------------------

upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
GCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGgtaagtttaaaagcttcaggataaacataatgagaaagtgaagttgcctaattgttttacatgtacaaaat--gctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaa--cag
|||| |||||||| |||||||| || ||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||||||||| || || ||||||| ||   |  || |   |    ||   |||   |   ||||      || | |||| |  |     ||||  | |     | |||  |  |   | | ||| || |    || | |||| |   |||
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgag---agtagttatcgttagaa---aatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag